Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g218 ATGAGTTTTATTATATATTTTGCTTTAAATGACATTAGGGTTTTCATTTGTCGATTTGTTTATTATTGTTTGGCCACCGGATTAATTAAATCCAATTCAAGTAAGATTAAGACATGGAATAGGTGTAAAGCCTGGAGTGTTCTTGTTGCTGTTGCTCTTTCAATCCTCCATCAACAAACTGTGGTAGCCATGAAGGTTTTCAATGCGGAGTCGGGTGCCCTGGAGATGGATTCTGGAGAAAAGCGGCTCAATGAGCTTGGATACAAGCAAGAACTCAGAAGAGAGATGACTCTGTTTAAGACCCTGGCAATTACATTCTCGAGCATGGCGGTTTTCACAGGGACACCTCTTTATGGTTCATGTCTGCGATATGCAGGCCCTGCAAGCTTAATATGGGGATGGGTTGTGGTCACATTTTTCACATGGTTTGTTGGAATTGCCATGGCTGAAATATGCTCCTCTTTCCCAACAACTGGTTCCCTCTACTTCTGGGCTGCCCATTTGGCCGGACCCAGATGGGGGCCATTCGCGTCGTGGTGCTGTGCATGGCTCGAGGCCATAGGCCTCATTTCAGGAATTGGCGCTCAGGCATTTTCAGGATCTCAGGCACTGCAATTTATCATTCTTTTGGCCACTGGAAATAACAAGGGGGGAGGCTACTTTGCTTCCAAGGGCGTATTCTTAGGCATGTATGTGGGCCTCACCATCATTTGGGCAGTTCTCAACACGTTTGCACTACAAGTCGTTGCATTCCTTAGCATAATTTCCATATGGTGGCAGATCCTTGGTGGCCTGGTTGTGATTATAATGCTTCCACTGGTGGCGCGGCCGACACAATCAGCCTCTTACGTGTTCACTCATTTTGAAACCGCACCTGAATCAACAGGAATATCTAGCAAGCCTTATGCTGTAATTTTATCGGTACTCCTGAGCAACTACTGTTTATATGGCTACGACACTGCTGCTCATCTAACCGAGGAAACGAAGGGTGCTGATAGAACTGGCCCCATTGCAATTCTTTCTAGTATTGGGATCATCTCATTCTTCGGATGGGCTTACAACTTAGCTCTCACCTTCAGCATCCAGGATCCAAACTACTTATACGACCCAAACAATGAGACAGGTGGGGGCCTTGTACCAGCACAGATAATTTACGATGCATTCCACCGGAGATATCAGAGTGCCACCGGAGCTGTAGTTTTCATGTGCATCATCTGGGGATCCTTCTTCTTTTGTGGGCTTTCCGTCACAGCTAGTGCTGCCAGGGTTGTTTATGCTCTATCTCGAGATAAAGGAATTCCATTTTCACCAATTTGGCGAAAAATTCATCCCAAGTACAAGGTTCCAAGGAATGCAGTGTGGCTCTGTGCGGTCATCGGCATGCTTCTCGGGCTGCCCATCTTGAAACTGGACGTAATCTTCACTGCCATAATTTCAATAAGCACCATTGGGTGGGTCGGTGGCTATGCGGTCCCTATATTTGCGAGGCTGGTCATGGCTGAGAAGAATTTTAAACCAGGACCCTTTTATCTAGGGAGAGCAAGAAGGCCAGTCTGCTTAGTAGCCTTCCTGTGGATATGTTATACCTGTTCAGCCTTCTTGTTGCCAACTGTCTACCCTATCACATGGGACACTTTCAACTATGCGCCAGTGGCTCTTGGCCTGGTTCTCTCACTGGTCATGCTATGGTGGGTTTTGGATGCAAGGAAGTGGTTCAAGGGGCCGGTTCGAAATATTGATTTTCAAAATTTCAAATCATTGAAAACCTTCATGTAG 1776 46.17 MSFIIYFALNDIRVFICRFVYYCLATGLIKSNSSKIKTWNRCKAWSVLVAVALSILHQQTVVAMKVFNAESGALEMDSGEKRLNELGYKQELRREMTLFKTLAITFSSMAVFTGTPLYGSCLRYAGPASLIWGWVVVTFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPRWGPFASWCCAWLEAIGLISGIGAQAFSGSQALQFIILLATGNNKGGGYFASKGVFLGMYVGLTIIWAVLNTFALQVVAFLSIISIWWQILGGLVVIIMLPLVARPTQSASYVFTHFETAPESTGISSKPYAVILSVLLSNYCLYGYDTAAHLTEETKGADRTGPIAILSSIGIISFFGWAYNLALTFSIQDPNYLYDPNNETGGGLVPAQIIYDAFHRRYQSATGAVVFMCIIWGSFFFCGLSVTASAARVVYALSRDKGIPFSPIWRKIHPKYKVPRNAVWLCAVIGMLLGLPILKLDVIFTAIISISTIGWVGGYAVPIFARLVMAEKNFKPGPFYLGRARRPVCLVAFLWICYTCSAFLLPTVYPITWDTFNYAPVALGLVLSLVMLWWVLDARKWFKGPVRNIDFQNFKSLKTFM* 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2352062 2359074 + Vvi18g218 Vvi18g218 779921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g218 591 Pfam Amino acid permease 98 554 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vvi18g218 591 ProSitePatterns Amino acid permeases signature. 125 156 IPR004840 GO:0006865|GO:0016021|GO:0055085
Vvi18g218 591 PANTHER AMINO-ACID PERMEASE BAT1 HOMOLOG 63 585 - -
Vvi18g218 591 PIRSF AA_transporter 80 584 - -
Vvi18g218 591 Gene3D Amino acid/polyamine transporter I 91 574 - -
Vvi18g218 591 PANTHER AMINO-ACID PERMEASE BAT1 63 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g218 - - - vvi:100243841 1033.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g218 . . . Bda03g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1430 Cone7ag1506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015692 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 2 10