Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g219 ATGATTCAAAATAGTAATTACACCGCCATGGCCGCGGCGGCGTCTGCTGTTCTGAATCCGCCCTTCATCACTCCTGAGCAACCTTCGAGACGGCCCAATGCCATCTTTTGGACCAGACCCATTTCATATTCTTCGTCTCTTTCCCTTTCTCTGTCTCGGCGGCAACGGCGTCTTTCTAGGCCTGGACCCCTAGTTGCGGTCGCTTCTCTGAAGGAAAATTTGGGTCGTCTGAGGAAGAATTGGAGTGACCTTACAAGCCTAAACTACTGGGTGGTTAGGGACTACTACCGTCTCGTAAACTCGGTTAACGCCCTCGAACCGCAGATTCAGAGACTCTCTGATGAACAGTTGGCTGCAAAAACTGTGGACTTCCGTGTCCGGCTGAGACAAGGAGAGACGCTTGCGGATATTCAAGCTGAGGCATTTGCAGTTGTCCGGGAGGCTGCGAGGAGGAAGCTTGGAATGCGCCATTTTGATGTCCAGATCATTGGTGGAGCTGTGCTTCATGATGGGTCCATTGCTGAGATGAAAACGGGGGAAGGAAAAACCTTGGTTTCCACATTAGCAGCCTATCTCAATGCCCTCACTGGTGAGGGTGTTCATGTGGTAACTGTCAATGATTATCTGGCCCAACGTGATGCTGAGTGGATGGGTCGTGTTCATCGTTTCCTAGGTCTTTCAGTGGGTCTTATTCAGAGGGGGATGACATCAGAAGAGAGAAGATCCAACTATGGATGTGATATAACATATACCAATAATTCAGAACTGGGCTTTGATTATTTACGAGATAATCTTGCTGGAACTAGTGGGCAACTAGTGATGAGATGGCCAAAGCCATTTCATTTTGCCATAGTTGATGAAGTTGATTCAGTTCTTATTGATGAAGGAAGAAATCCTTTGTTAATAAGTGGTGAGGCTAGTAAAGATGCTGCACGATATCCTGTTGCTGCCAAAATAGCTGAGCTGCTTATTCGAGGACTTCATTATAATGTGGAGCTTAAGGATAATTCAGTGGAGTTGACTGAGGAAGGAATTGCACTTGCTGAGATGGCTCTTGAAACTAATGACCTATGGGATGAAAATGATCCTTGGGCTAGGTTTGTGATGAATGCTTTGAAGGCCAAAGAGTTCTATCGGCGGAATGTTCAATACATTGTTAGGAATGGGAAGGCTCTTATTATCAATGAGTTGACTGGGAGAGTTGAAGAAAAGCGAAGATGGTCTGAGGGGATTCACCAGGCTGTAGAGGCTAAAGAAGGTCTGAAGATTCAGGCTGATTCGGTTGTGGTGGCACAAATCACGTATCAATCTCTGTTTAAGCTCTATCCGAAGCTGTCAGGGATGACAGGGACTGCGAAAACTGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCTGTTATTGAAGTGCCCCCAAATCTGCCAAATATTCGTAAAGATTTACCCATCCAAGCTTTTGCGACTGCTCGTGGAAAGTGGGAAAATGTTCGTGAAGAAGTTGAATACATGTTCAGACAGGGTCGTCCTGTTTTAGTTGGCACCACTAGTGTTGAGAATTCAGAATATTTGTCCGATCTGCTGAAGGAACGAAAAATCCCCCACAATGTCCTCAATGCACGACCTAAGTATGCTGCAAGGGAGGCTGAAATTGTTGCTCAAGCAGGGCGGAAATTTGCTATCACCATTTCTACAAATATGGCTGGCAGAGGCACTGACATAATCCTAGGAGGAAATCCAAAAATGCTTGCAAAAGAAGTTATAGAAGACAGCTTACTTTCATTCTTGACTCAAGAAGCTCCCAATGTTGAAGTTGATGGCGAGCCAACTTCTCAAAAGGTATTGTCAAAGATAAAGATTGGTTCTGCTTCACTTGCTTTGCTAGCTAAGACAGCCCTAATGGCTAAATATGTGAGCAAAGGTGAGGGTAAGAGCTGGACATATCAAAAGGCAAAATCTATGATCTCAGAATCTGTGGAAATGAGTCAGTCCATAGATTGGAAAGAGCTAGAGAAGCTTGCTAATGAACAGTCTGAGATGTACCCTCTTGGCCCTACTATAGCACTAGCTTATCTATCAGTTTTGAAGGATTGTGAAGCACACTGCTTGAGTGAAGGATCCGAAGTGAAAAGGCTTGGGGGGCTTCATGTGATTGGCACATCCTTGCATGAATCTCGAAGGATTGATAACCAGCTTCGTGGTAGAGCAGGCAGACAAGGGGATCCTGGATCAACACGGTTTATGGTGAGCTTGCAGGATGAGATGTTTCAGAAATTTAATTTTGATACTGAGTGGGCTGTAAGACTTATATCAAAGATTACAAATGATGAAGATATACCAATTGAAGGTGATGCAATTGTAAAACAGCTCTTGGCCCTTCAAATCAATGCGGAGAAGTACTTCTTTGGCATAAGAAAGAGCTTGGTTGAGTTCGATGAAGTATTAGAGGTGCAAAGAAAGCATGTCTATGACCTTAGGCAACTGATTTTAACAGGTGACATTGAAAGTTGTTCCCAACATGTATTCCAGTACATGCAAGCAGTGGTAGATGAAATTGTCTTTGGAAATGTTAATGCACTGAAGCATCCGAGTAAGTGGAATTTGGGTAAGCTGCTAAAGGAATTTATTGGAATTTCAGGGAGGCTATTGGATGACTCATTTGTAGGGATTTCTGAAGAAACTTTACTGAAGGCCCTTGCACAGCTTCATGAATTGAGTTCTGTAGATATTAACAACTTTTACCTTCCAAACTTGCCAACACCTCCAAATGCCTTCAGAGGAATCCGCAGGAAGACCTCTTCATTGAAACGTTGGCTTGCCATATGCTCTGATGATTCAGCTAGGGATGGAAGGTATCGAGCAACTGCTAATCTTCTTCGCAAGTACCTTGGAGATTTTCTAATTGCTTCATATTTAGATGCTGTACAAGAATCTGGTTATGATGATGCATATGTCAAGGAGATAGAGAGGGCAGTACTCGTGAAGACTTTAGATTGTTTCTGGAGGGATCATCTTATAAACATGAACAGGCTCAGCTCAGCGGTAAATGTGAGGAGTTTCGGCCACAGAAATCCACTCGAAGAATACAAGATTGATGGATGTCGGTTTTTCATATCAATGCTCAGTGCAACACGGCGGCTAACTGTAGAATCACTCTTGCGGTACTGGTCATCACCGATGGAGTCACAAGAGCTGTTTGTGTCATAG 3204 43.85 MIQNSNYTAMAAAASAVLNPPFITPEQPSRRPNAIFWTRPISYSSSLSLSLSRRQRRLSRPGPLVAVASLKENLGRLRKNWSDLTSLNYWVVRDYYRLVNSVNALEPQIQRLSDEQLAAKTVDFRVRLRQGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMTSEERRSNYGCDITYTNNSELGFDYLRDNLAGTSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKIAELLIRGLHYNVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRNVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPPNLPNIRKDLPIQAFATARGKWENVREEVEYMFRQGRPVLVGTTSVENSEYLSDLLKERKIPHNVLNARPKYAAREAEIVAQAGRKFAITISTNMAGRGTDIILGGNPKMLAKEVIEDSLLSFLTQEAPNVEVDGEPTSQKVLSKIKIGSASLALLAKTALMAKYVSKGEGKSWTYQKAKSMISESVEMSQSIDWKELEKLANEQSEMYPLGPTIALAYLSVLKDCEAHCLSEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDAIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQLILTGDIESCSQHVFQYMQAVVDEIVFGNVNALKHPSKWNLGKLLKEFIGISGRLLDDSFVGISEETLLKALAQLHELSSVDINNFYLPNLPTPPNAFRGIRRKTSSLKRWLAICSDDSARDGRYRATANLLRKYLGDFLIASYLDAVQESGYDDAYVKEIERAVLVKTLDCFWRDHLINMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLRYWSSPMESQELFVS* 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2359939 2406066 - Vvi18g219 Vvi18g219 779922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g219 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 473 IPR027417 -
Vvi18g219 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 326 IPR014001 -
Vvi18g219 1067 Pfam SecA preprotein cross-linking domain 312 416 IPR011130 GO:0016020|GO:0017038
Vvi18g219 1067 Gene3D - 96 473 IPR027417 -
Vvi18g219 1067 SMART SecA_DEAD_2 80 460 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vvi18g219 1067 SUPERFAMILY Pre-protein crosslinking domain of SecA 304 425 IPR036670 GO:0016020|GO:0017038
Vvi18g219 1067 CDD SF2_C_secA 478 749 IPR044722 -
Vvi18g219 1067 Pfam SecA DEAD-like domain 92 459 IPR011115 GO:0005524|GO:0016020|GO:0017038
Vvi18g219 1067 ProSitePatterns SecA family signature. 560 575 IPR020937 GO:0006605|GO:0006886|GO:0016020
Vvi18g219 1067 Gene3D - 475 781 IPR027417 -
Vvi18g219 1067 Gene3D Helical scaffold and wing domains of SecA 784 905 - -
Vvi18g219 1067 Gene3D Helical scaffold and wing domains of SecA 927 1055 - -
Vvi18g219 1067 Hamap Protein translocase subunit SecA [secA]. 76 1057 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 SUPERFAMILY Helical scaffold and wing domains of SecA 785 1064 IPR036266 -
Vvi18g219 1067 Gene3D - 306 426 - -
Vvi18g219 1067 CDD DEXDc_SecA 116 472 - -
Vvi18g219 1067 PRINTS SecA protein signature 137 161 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PRINTS SecA protein signature 175 189 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PRINTS SecA protein signature 191 201 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PRINTS SecA protein signature 244 264 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PRINTS SecA protein signature 397 419 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PRINTS SecA protein signature 434 451 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PRINTS SecA protein signature 471 484 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 SMART SecA_PP_bind_2 305 416 IPR011130 GO:0016020|GO:0017038
Vvi18g219 1067 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 72 1065 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 762 IPR027417 -
Vvi18g219 1067 ProSiteProfiles SecA family profile. 77 781 IPR014018 -
Vvi18g219 1067 Pfam SecA Wing and Scaffold domain 779 1054 IPR011116 GO:0016020|GO:0017038
Vvi18g219 1067 TIGRFAM secA: preprotein translocase, SecA subunit 102 872 IPR000185 GO:0005524|GO:0006605|GO:0006886
Vvi18g219 1067 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 72 1065 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g219 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] - vvi:100248990 2045.78
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g219 . . . Bda03g00020 . Bpe04g00013 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004074 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 8 1 1 44