Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g220 ATGAATTTCTACCTCGCTTGTGGTCTGACCAGTTTTATTCCGTTTGGAAGGACTGGGTTCTTCCGAACGACGCCGTTTCGGTTGAACCCAGAGGTGGGAAGGATTTTTGTGATAATTGCTTCTTTATCGTTTGTGAATGATTCTGTGATTAGTTTTAGTTATATGGCGCGAATCATGAACTGTTTGAATGGAATGAAGGAGGAGAAAAGATATGAATTGGGTTTGATTTTGAGACAGCGCAAAACCTGTGGAGTTTATGGACTGTGGTATGATTTGGATGATCAATGGATGTATCTTGTATGTGAGCGGTGGGAAGGTGACCTTGTGGAAAAAATTAGTGAACTGAAAAATGAGGTTGTTGGTGGGAATGACAAAAGTTTGCTGAATTCAGCTATAGAAGATGGGATATTCTGTTTTGCAATGATGGGTATGGAGATATGCAAAGCAATTATTGGCTTACATTCAGAAGGACTAGTTAGTGGTTGTTTAGCACCATCATGCTTTAATTTTGATGGTCTTGGCCATGTTTTTGTTGATTTGAATGAGATGTTGGTGACGGGAAGGAAGATTCATAGGAGCCTTGTGGAGAGTGTTTCAGAGGCATTTCTGAGCCCAGAAGTGTTCATTGAGTTATTGCAGAAAGAGGGCATTGAACTAGAATGCGACAGTTTAAGTTATTCAGTTGGATATAGCTCTGATGTTTGGTCATTAGCTTGTATGTTGCTCAGGCTTTTTATTGGAAACCCATTCACTGAACTCCATATAAGAAGTGCAAAAAGGCATTCTGATTATTTAGAAGTGTACATGGATTGTAGGGAGGAAGTCAGTTCTTTGTTGGAAACTAAACTGGGCACAAATTTTGTAGCACTGCAAAAGATTCTCTGTGAATGTTTGAATTTGGATCCAAAAAGTCGTCCACTTGTAGCTGATGTGTGGAAATGCATTAGGGAATTGGTTATAAAACCTCAATTTGATATTATGGTCAGTCAAGAGGGAACAGTTAATGAGGGCAACAATGTGCACTGCTTGGTTCTTGGAGAATTGTGTCAGTTGCCCAAGGAAACTAATAAAGGATCAAAAGCAGTGAAGACAGATGAAAGCGGCAGAGAAAATGTTGATCAAGCTGGGGAATTGCAGGATGATAAAGATTTCATTGAGGGTCTCTCTGGATCTACCGTCAAATCTATAAATCTGCAAGGCCATCTTGATTGTATTACAGGATTAGCTGTTGGAGAGGATGCTGAAATTCAAGAGCTAAATTTCTTCCTTTTCCAGTTATCAGTGTGCCTGGTCATGGTATATAGGGATTTCTTTGTGATATTAGTTCATGATCACCTAGCCATTCATAGCAAGCCCGCATCACTATCTTTTCTTTCTTTTATAGGGGGGTTCCTGTTTAGCTCCTCCTTCGATAAAACAATCCATGTTTGGTCTTTGCAGGACTTTACCCTTGTACATCAATTTAGAGGTCATGAGCATAGAGTCATGGCTGTAGTTTTTGTGGATGAAGAACAACCTTTGTGCATTAGTGGTGATATCGGAGGTGGCATTTTTGTCTGGGGAATTAGCATCCCTCTGGGGCAAGAACCATTAAAGAAATGGTTTGAGCAAAAGGATTGGCGCTATAGTGGTATTCATGCCTTGGCAATTTCTGGAACTGGATATCTCTATACTGGCAGTGGAGATAAGTCAATAAAAGCATGGTCATTGCAGGATTGCACCCTATCATGCACTATGAATGGTCATAAATCAGTTGTGTCTGCGCTAGCAGTTTCTGACGGTGTTCTTTACAGTGGGAGTTGGGATGGGACCATCAGGCTGTGGTCTCTTAATGATCATAGTCCTTTGACCGTATTGGGGGAAGACACACCTGGAAATGTGATCTCAGTTTTGTCTCTAAAAGCTGACCACCATATGCTTCTTGCAGCTCATGAGGACGGATGCTTAAAGATCTGGAGGAATGATGTGTTTATGAAATCCATACAAGCCCATGATGGTGCTGTTTTTGCTGTTGCCATGGGAGGGAAATGGTTGTTCACAGGAGGTTGGGACAAGAGTGTCAATGTACAGGAGATATCAGGAGATGATCTTCAAATAGAAGCATTGCCAGTTGGATCTATTGCTTCCGACTCCGCCGTAACTGCACTGTTATACTGGCAAGGAAAGCTTTTTGTTGGCTGTGCTGATAGAATTATCAAGGTTTGA 2205 41.13 MNFYLACGLTSFIPFGRTGFFRTTPFRLNPEVGRIFVIIASLSFVNDSVISFSYMARIMNCLNGMKEEKRYELGLILRQRKTCGVYGLWYDLDDQWMYLVCERWEGDLVEKISELKNEVVGGNDKSLLNSAIEDGIFCFAMMGMEICKAIIGLHSEGLVSGCLAPSCFNFDGLGHVFVDLNEMLVTGRKIHRSLVESVSEAFLSPEVFIELLQKEGIELECDSLSYSVGYSSDVWSLACMLLRLFIGNPFTELHIRSAKRHSDYLEVYMDCREEVSSLLETKLGTNFVALQKILCECLNLDPKSRPLVADVWKCIRELVIKPQFDIMVSQEGTVNEGNNVHCLVLGELCQLPKETNKGSKAVKTDESGRENVDQAGELQDDKDFIEGLSGSTVKSINLQGHLDCITGLAVGEDAEIQELNFFLFQLSVCLVMVYRDFFVILVHDHLAIHSKPASLSFLSFIGGFLFSSSFDKTIHVWSLQDFTLVHQFRGHEHRVMAVVFVDEEQPLCISGDIGGGIFVWGISIPLGQEPLKKWFEQKDWRYSGIHALAISGTGYLYTGSGDKSIKAWSLQDCTLSCTMNGHKSVVSALAVSDGVLYSGSWDGTIRLWSLNDHSPLTVLGEDTPGNVISVLSLKADHHMLLAAHEDGCLKIWRNDVFMKSIQAHDGAVFAVAMGGKWLFTGGWDKSVNVQEISGDDLQIEALPVGSIASDSAVTALLYWQGKLFVGCADRIIKV* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2406172 2411495 - Vvi18g220 Vvi18g220 779923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g220 734 ProSiteProfiles Protein kinase domain profile. 21 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g220 734 PANTHER - 49 734 IPR044715 -
Vvi18g220 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 611 - -
Vvi18g220 734 SUPERFAMILY Protein kinase-like (PK-like) 88 322 IPR011009 -
Vvi18g220 734 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 49 734 - -
Vvi18g220 734 Gene3D - 386 526 IPR015943 GO:0005515
Vvi18g220 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 618 IPR001680 GO:0005515
Vvi18g220 734 SUPERFAMILY WD40 repeat-like 444 734 IPR036322 GO:0005515
Vvi18g220 734 Gene3D Transferase(Phosphotransferase) domain 1 79 320 - -
Vvi18g220 734 PRINTS G protein beta WD-40 repeat signature 465 479 IPR020472 -
Vvi18g220 734 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Vvi18g220 734 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
Vvi18g220 734 Gene3D - 527 734 IPR015943 GO:0005515
Vvi18g220 734 Pfam WD domain, G-beta repeat 578 609 IPR001680 GO:0005515
Vvi18g220 734 SMART WD40_4 572 609 IPR001680 GO:0005515
Vvi18g220 734 SMART WD40_4 612 653 IPR001680 GO:0005515
Vvi18g220 734 SMART WD40_4 481 521 IPR001680 GO:0005515
Vvi18g220 734 SMART WD40_4 527 569 IPR001680 GO:0005515
Vvi18g220 734 SMART WD40_4 654 691 IPR001680 GO:0005515
Vvi18g220 734 SMART WD40_4 439 478 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g220 - - - csin:114288437 775.007
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g220 . Blo12g01120 . Bda03g00019 . . Bma04g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013185 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27