Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g221 ATGCTTAAAATTCAGAACTTTCAGAATAAATGGTCACTGGGATGGAATATTTTGGCCAGAATGTGCAGTTCTGGTGAAATAATAAAGGAGACTGCAGATCCAACTAAAAGGATATGTAAAATTATGATTTCTTGCCCAAAATTAGAGCTTGATACTTCCCTTAGTGAAAGTGGGATCAGGGTATCACCAATTGTGGTTGAGAATGTCCTCAAGAGATTTGAGAATGCAGGGCGGGTTGATGAAGCAGTTGGAATTGTTAAAGAAATGGATTCTAGTGTTTGTAAGCCAACATCTTTTATTTATAGTGTTCTGGTTCATACTTATGGGATAGAAAATCGAATCGAAGATGCCGTTTATACGTTTTTAGATATGGAAAGGAATGAAATTGAGGCTGATGTGGCAGTTTATAATGCATTGATTGGTGCTTTCTGTAAAGTAAACAAACTCAAGAATGCATATAGGGTTTTAAATGAGATGGATTGCAAGGGGATCAGACCTAATTCCAGGACCTGCAATATTATCCTAAACAGCTTAATCAGTTGTGGGGATACTGATGAGGCTTTTAGGGTCTTCCGCAGAATGATCAAGGTTTGTGATCCAGATGCAGACACATATACAATGATGATAAAAATGTTTTGTGAGAATGATAAGCTAGAGATGGCTCTTAAAGTGTGGAAATACATGAGGTTGAAGCAGTTTGTTCCTAGCATGCATACTTTTTCAGTTCTTATTAATGGACTGTGTAAAAAGGGTAATGCTTCCAAGGCTTGCATCTTATTGGAAGAGATGATAGAGAAGGGTATTCGGCCATCAAGTGTGACATTTGGGAAGTTAAAACAATTACTTATAAAGGAAGGGAGAGAAGATGTACTTGAATTTCTTCAAGAGAAAATGAATCTCTTGGTCAAGGAGCCTTTATGTGATCAAGAAATTATTGCTAATGAGCTGAATATACTGATCAATGTTGCTGAGTAG 975 36.82 MLKIQNFQNKWSLGWNILARMCSSGEIIKETADPTKRICKIMISCPKLELDTSLSESGIRVSPIVVENVLKRFENAGRVDEAVGIVKEMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVNKLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTMMIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKGIRPSSVTFGKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCDQEIIANELNILINVAE* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2411696 2414689 + Vvi18g221 Vvi18g221 779924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g221 324 Pfam PPR repeat family 132 178 IPR002885 -
Vvi18g221 324 Pfam PPR repeat family 200 249 IPR002885 -
Vvi18g221 324 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 77 - -
Vvi18g221 324 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 76 305 - -
Vvi18g221 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Vvi18g221 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 197 IPR002885 -
Vvi18g221 324 Gene3D Tetratricopeptide repeat domain 179 306 IPR011990 GO:0005515
Vvi18g221 324 Gene3D Tetratricopeptide repeat domain 46 178 IPR011990 GO:0005515
Vvi18g221 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Vvi18g221 324 TIGRFAM PPR: pentatricopeptide repeat domain 238 271 IPR002885 -
Vvi18g221 324 TIGRFAM PPR: pentatricopeptide repeat domain 100 132 IPR002885 -
Vvi18g221 324 TIGRFAM PPR: pentatricopeptide repeat domain 170 196 IPR002885 -
Vvi18g221 324 TIGRFAM PPR: pentatricopeptide repeat domain 135 167 IPR002885 -
Vvi18g221 324 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Vvi18g221 324 PANTHER OS03G0761300 PROTEIN 8 77 - -
Vvi18g221 324 PANTHER OS03G0761300 PROTEIN 76 305 - -
Vvi18g221 324 Pfam Pentatricopeptide repeat domain 56 109 IPR002885 -
Vvi18g221 324 SUPERFAMILY HCP-like 165 278 - -
Vvi18g221 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g221 - - - vvi:100259211 494.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32