Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g23 ATGAAGAAGTCAAGCACATTTCTCCCGCAGAGATCTAATTCAATGGAATTCCCAAACTTTCCTCGCTCAACATCACTTGTCCTAAACAAGTCTCCTTCAGTTGAATACCCAAGCTCTGTCAATCCAACTCAGGGAGAGCCGATGCTTCTTTCCTGTCATCCTCACCCCCTGGCTCAGGTCACCTCACCTGAACCCTTCATATGCATGGGCTGCAAGGAATATGGAGCAGGCACAAGGTTCACATGCCAACAGTGTAACAATCAACTACATGAGTTCTGTGCCTTGGCTCCTACAACTCTCAAGAGTCATCCTCTCCACCGCCTACACCCACTGGAATTCTGTTCTAAGCCAGTTAAAGGCGGAATTTTAGGGACCAAGTGTGATATTTGCAGCAAGCCAACGGCAGGGTATACTTTCCGTTGCAGTGCATGTAGTTTCCAGATTCACCCTTGCTGCGCTATGCTTTCTACTGAAATGACCTTTGTGGTCCATCCCCACCCCCTAACCCTGATGCCTGCAATGGCATTATCAAGTGGTGACCCTGGTTTCAGCTGTGGTGAGTGCAAAAGAAAGAGGTCAGGGCGGGTGTTTCATTGCACAGCCCCATCATGTGATTATCATCTCCATGCAGTTTGTGCTAAGAACATGGTTAATGGGTTGCGTGCAAGTGGCATCATGAGCTTAGAAAAGCCTAGCATGCTGGGGACTGCCGCAAAGATTGCATCTCAGGTCGTTATAGAGTTCATTGGAGGACTGATTGAGGGGCTTGGACAAGGTGTTGGGGATGTCCTGCAAGAAACCCTCGAAGAAGGGAAGCACACATTTCTCTCACACAAGTCTCCTTCCATGGAATTCCCGAAGCAAGCATCACTAGTCCGAAGCAAGTCCCCTTCATTTCAATACCCAACCTCTCATAATCAAACTCGGGGAGAGCAGATACTTCTGTCCTGTCACCCACAACACCCCCTAGCTCTACTCACCTCACCTGACCCTTTTACATGCATGGGCTGCAAGGAATACGGAGCAGGCACAAGGTTCACATGCCAACAGTGTAACCATCAGCTACACGAGTTCTGTGCCTTGGCTCCCACCACTCTCAAGAGCCATCCCCTCCACTGCCAGCACCCACTTGGATTCTGTTCTAAACCAGTTAAAGGCGGAATTCTAGGGAAAAGGTGTGATATTTGCAACAAGCCAACGGCAGGGTATACATTTCGTTGCAGTGCATGCAGTTTCCAGATGCACCCTTGCTGTGCAATGCTTTCTACGGAAATGACCTTTCCGCTGGCTCATCCCCACCCCCTAACCCTGATGCCTGCAATGACATTATCAAGTGGTGAACCTGGTTTCAGCTGTGGTGAGTGCAAAAGAAAGAGGCCAGGGCGGGTGTATCGTTGCACAGCCACAGCATGTGATTACCATCTCCATGCAGTTTGTGCTAAGAACATGGTGAATGGGCTGCGTGCCAATGGCGTCACGTGCTTAGAAAAGCCTAGTATGCGGGGGACTTTCATAAAGATTGCATCCGTGGTTGTTATGGAGTTCATTGGAGGACTCATTGGGGGGCTTGGACAAGGTGTTGGGGATGTCCTGGGTCAAACTATGGCTGCAGGGAAGAGCGCTAGTGCAAGAAGATTGGAATGA 1644 49.64 MKKSSTFLPQRSNSMEFPNFPRSTSLVLNKSPSVEYPSSVNPTQGEPMLLSCHPHPLAQVTSPEPFICMGCKEYGAGTRFTCQQCNNQLHEFCALAPTTLKSHPLHRLHPLEFCSKPVKGGILGTKCDICSKPTAGYTFRCSACSFQIHPCCAMLSTEMTFVVHPHPLTLMPAMALSSGDPGFSCGECKRKRSGRVFHCTAPSCDYHLHAVCAKNMVNGLRASGIMSLEKPSMLGTAAKIASQVVIEFIGGLIEGLGQGVGDVLQETLEEGKHTFLSHKSPSMEFPKQASLVRSKSPSFQYPTSHNQTRGEQILLSCHPQHPLALLTSPDPFTCMGCKEYGAGTRFTCQQCNHQLHEFCALAPTTLKSHPLHCQHPLGFCSKPVKGGILGKRCDICNKPTAGYTFRCSACSFQMHPCCAMLSTEMTFPLAHPHPLTLMPAMTLSSGEPGFSCGECKRKRPGRVYRCTATACDYHLHAVCAKNMVNGLRANGVTCLEKPSMRGTFIKIASVVVMEFIGGLIGGLGQGVGDVLGQTMAAGKSASARRLE* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 331413 338450 + Vvi18g23 Vvi18g23 779726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g23 547 SUPERFAMILY Cysteine-rich domain 337 423 IPR046349 -
Vvi18g23 547 Pfam C1 domain 370 419 IPR004146 -
Vvi18g23 547 Pfam C1 domain 164 213 IPR004146 -
Vvi18g23 547 Pfam C1 domain 317 360 IPR004146 -
Vvi18g23 547 Pfam C1 domain 52 94 IPR004146 -
Vvi18g23 547 Pfam C1 domain 431 480 IPR004146 -
Vvi18g23 547 Pfam C1 domain 104 153 IPR004146 -
Vvi18g23 547 SMART PHD_3 392 456 IPR001965 -
Vvi18g23 547 SMART PHD_3 126 189 IPR001965 -
Vvi18g23 547 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN PROTEIN 296 542 - -
Vvi18g23 547 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN PROTEIN 30 277 - -
Vvi18g23 547 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 296 542 - -
Vvi18g23 547 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 30 277 - -
Vvi18g23 547 SUPERFAMILY Cysteine-rich domain 402 481 IPR046349 -
Vvi18g23 547 SUPERFAMILY Cysteine-rich domain 71 166 IPR046349 -
Vvi18g23 547 SMART c1_12 109 158 IPR002219 -
Vvi18g23 547 SMART c1_12 375 424 IPR002219 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g23 - - - vvi:100258099 548.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g23 Blo01g01659 . . . Bpe02g00284 . . . . . . Cma09g00008 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02438 Csa04g02751 . . . . . . . . . . . . Cmo09g00009 . . . Car09g00008 . . . . . . . . . Cla11g01864 Cam11g1933 Cec11g1958 Cco11g1972 Clacu11g2098 Cmu11g1900 Cre11g2309 . . Chy07g00440 Cme07g00010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012721 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 23