Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g230 ATGTCTACTTGTGATTCTTTGAAGAGTCCAGAATTTGAATATATCAATAACCATGATGCTTCTCCAGTTAGTTTTGTTGAGACAAAGACAGGTACCTGTCTCCATCTTTCGAAGCATGTGGAAATAACAGGAAATATCTGCAAGGGAGATGTGGAGGTGGAAACAATTGACAAAATTGTTAATGTTGATAAAAATTTCCTGGATCCACGGTTTTATGCAGCCATCGATTGTGATATCTACAGTAACTTGCGTGCATCTGAGGCAAAGAAACGGCCTTCCATTGACTTCATGGAAAGGGTTCAGAAAGACATTAATCCCAGCATGCGTGCAATACTCATTGATTGGCTTGTGGAGGTAGCTGAAGAGTACAGGCTTGCACCAGATACACTATTTTTGACTGTTAACTACATAGATCGTTATCTTTCTGGCAATGTTATGAATAGGAAGCAGTTACAATTGCTTGGCATTGCCTGCATGATGATTGCAGCTAAATATGAGGAGATTTGTGCGCTCCAGGTGGCAGAGTTCTGTTACATAACTGATAACACGTACTCCAAGGAGGAGGTTTTGCAAATGGAATCTGCAGTCTTGAATTATTTGAAGTTTGAAATGACAGTCCCAACAACTAAATGTTTTTTGAGGCAATTTATTCATGCTGCTCAAGGGAACAATAAGGATCCATCATTGCAACTGGAATGCTTGGCAAGCTACCTTACAGAGTTATCACTCCTAGAGTACAACATGCTTTGTTATGCACCATCGCTAATAGCTGCTTCTGCGACTTTCTTGGCTAGATTTATACTTTTCTCAGCAGAGAAGCCTTGGAATTCTATGTTGGGGCATTATACACATTACCTGCCCTCTCATTTGCATGATTGTGTTAAGGCATTACATCATCTTTGCTGTAACAACCATGGTTCTGGTTTACCCGCAATTAAGGAGAAATACAGTCAGCACAAGTATAAATTTGTGGCAAAGAAGTATTGCCCCCCTTGTGTGCCTCCAGAGTTTTTTGAAGACCCAAGCGACTAG 1032 40.5 MSTCDSLKSPEFEYINNHDASPVSFVETKTGTCLHLSKHVEITGNICKGDVEVETIDKIVNVDKNFLDPRFYAAIDCDIYSNLRASEAKKRPSIDFMERVQKDINPSMRAILIDWLVEVAEEYRLAPDTLFLTVNYIDRYLSGNVMNRKQLQLLGIACMMIAAKYEEICALQVAEFCYITDNTYSKEEVLQMESAVLNYLKFEMTVPTTKCFLRQFIHAAQGNNKDPSLQLECLASYLTELSLLEYNMLCYAPSLIAASATFLARFILFSAEKPWNSMLGHYTHYLPSHLHDCVKALHHLCCNNHGSGLPAIKEKYSQHKYKFVAKKYCPPCVPPEFFEDPSD* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2485709 2489651 - Vvi18g230 Vvi18g230 779933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g230 343 SMART cyclin_7 211 299 IPR013763 -
Vvi18g230 343 SMART cyclin_7 114 198 IPR013763 -
Vvi18g230 343 Gene3D - 78 326 - -
Vvi18g230 343 CDD CYCLIN 108 197 IPR013763 -
Vvi18g230 343 Gene3D - 92 205 - -
Vvi18g230 343 PANTHER CYCLIN-A1-1 1 340 - -
Vvi18g230 343 PANTHER CYCLINS 1 340 IPR039361 -
Vvi18g230 343 PIRSF Cyclin_A_B_D_E 2 336 IPR039361 -
Vvi18g230 343 SUPERFAMILY Cyclin-like 68 204 IPR036915 -
Vvi18g230 343 SUPERFAMILY Cyclin-like 206 331 IPR036915 -
Vvi18g230 343 ProSitePatterns Cyclins signature. 109 140 IPR006671 -
Vvi18g230 343 CDD CYCLIN 205 298 IPR013763 -
Vvi18g230 343 Pfam Cyclin, C-terminal domain 207 326 IPR004367 -
Vvi18g230 343 Pfam Cyclin, N-terminal domain 78 204 IPR006671 -
Vvi18g230 343 SMART Cyclin_C_2 207 330 IPR004367 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g230 K06627 - vvi:100255774 672.544