Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g232 ATGGGAAGCCTGGAGCATCAAGTGGGTAACACAGGAAGCAAACGGATTGCTGCCTTGGACACCCCACCACCTCCATCACGCAGTCATGCTGCTCATCATCTTGATTTAGATGACCAGAAACCCGGGTGGAGAAAGTTTCTGGCCTTTGTTGGCCCTGGTTTTCTTGTCTCATTGGCGTATCTCGACCCTGGAAACTTGGAAACTGATCTGCAAGCAGGAGCTAATCATGGGTTTGAGCTACTATGGGTGGTGCTCATAGGATTGATTTTCGCTCTCATAATCCAATCCCTCGCTGCAAATCTCGGTGTAAGCACAGGGAAGCATCTTTCAGAGCTCTGCAAGGCCGAATACCCCATAATTGTCAAGTATTGCCTGTGGTTATTAGCTGAGATTGCTGTCATTGCTGCCGATATTCCCGAAGTGATAGGGACAGCCTTTGCACTGAATATACTTTTCAAGGTCCCCGTGTGGGCTGGGGTTCTCTTCACTGGCTTCAGCACTCTCCTGCTTCTTGGCCTGCAAAGATATGGGGTGAGGAAGTTAGAATTGTTGATAGCAGTGCTGGTATTCATAATGGCTGGTTGTTTCTTTGGAGAAATGAGTTATGTGAAGCCTCCAGCCACAGGTGTTTTAAAGGGCATGTTCATTCCCAAGCTCAAAGGCCAGGGTGCCACCGGTGATGCCATTGCCCTCTTGGGTGCTCTTGTTATGCCCCATAATCTCTTCCTCCATTCTGCACTTGTACTTTCTAGGAAGGTGCCCAACTCAGTCCGTGGCATCAATGAGGCATGTCGATATTTCTTGATAGAGAGTGGATTGGCATTATTCGTAGCATTTTTAATCAATGTTGCAGTTGTTTCCGTGTCGGGTACTGTTTGTTCTGCTGACAATCTTTCACAAGAAAACTTGGATCAGTGCAATGATCTTAATCTTAATTCTGCTTCTTTCCTCCTCAAGAATGTGTTGGGAGGGTCAAGCAAGGTGGTCTATGCCATTGCACTGTTTGCCTCAGGCCAAAGTTCCACCATCACAGGCACTTATGCTGGACAATTTATCATGCAGGGTTTCTTGGATATTAAAATGAGGAAATGGCTGAGGAACCTGATGACTAGAAGCATTGCCATTACACCTAGTCTCATTGTCTCCATTATTGGTGGATCTGCTGGTGCCGGCCGACTCATTATCATTGCATCAATGATTCTCTCATTTGAACTTCCATTTGCGCTGATCCCACTCCTGAAATTTAGTAGCAGTAACACCAAGATGGGCCCTCATAAGAATTCAATATACATCATAGTAATTTCGTGGATCCTGGGATTCGGAATCATCGGCATCAATATTTATTACCTATCCACCAGCTTCGTAGGTTGGCTGCTTCACAATAATCTCCCCAAGGTGGGAAATGTGTTCATTGGGATCATAGTATTTCCCCTCATGGCTATATATATCCTCTCAGTCATCTATCTCACCACCCGGAAAGACACTGTGGTGACATTCATCGAACCAGAAAAGAATGATCCGAATGTCCAAAATCATATGGAAAATGGGTTCGACCAGACTGATGGAGTGTTCGAATTAGGCCATGTTCCATATAGGGAGGATCTTGCTGACATCCCATTACCAAAGTAA 1629 45.55 MGSLEHQVGNTGSKRIAALDTPPPPSRSHAAHHLDLDDQKPGWRKFLAFVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSELCKAEYPIIVKYCLWLLAEIAVIAADIPEVIGTAFALNILFKVPVWAGVLFTGFSTLLLLGLQRYGVRKLELLIAVLVFIMAGCFFGEMSYVKPPATGVLKGMFIPKLKGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINEACRYFLIESGLALFVAFLINVAVVSVSGTVCSADNLSQENLDQCNDLNLNSASFLLKNVLGGSSKVVYAIALFASGQSSTITGTYAGQFIMQGFLDIKMRKWLRNLMTRSIAITPSLIVSIIGGSAGAGRLIIIASMILSFELPFALIPLLKFSSSNTKMGPHKNSIYIIVISWILGFGIIGINIYYLSTSFVGWLLHNNLPKVGNVFIGIIVFPLMAIYILSVIYLTTRKDTVVTFIEPEKNDPNVQNHMENGFDQTDGVFELGHVPYREDLADIPLPK* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2513714 2517765 + Vvi18g232 Vvi18g232 779935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g232 542 PANTHER METAL TRANSPORTER NRAMP5 36 541 - -
Vvi18g232 542 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 44 420 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 125 151 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 153 172 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 178 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 228 251 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 338 357 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 366 383 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PRINTS Natural resistance-associated macrophage protein signature 398 417 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 MobiDBLite consensus disorder prediction 1 33 - -
Vvi18g232 542 Hamap Divalent metal cation transporter MntH [mntH]. 32 454 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 Pfam Natural resistance-associated macrophage protein 67 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g232 542 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 36 541 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g232 K21398 - vvi:100266052 1036.17