Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g234 ATGCTAAAAGAGTCAAATCAAATTTTTATTTCAAATAAACCCGGATGGAGAAACTTTCTGGCGTTCGTTGGCCCTGGTTTTCTCGTCTCATTGGCTTATCTCGACCCAGGAAATTTGGAAACTGATCTACAGGCAGGATCCAATCATGGATACGAGCTGCTGTGGGTGGTGCTCATCGGATTGATATTCGCCCTCGTAATCCAATCACTTGCCGCAAATTTGGGTGTGATCACAGGAAAACATCTTTCAGAGCTATGCAGGGCAGAGTACCCAAAATATGTCAAGTATTGTTTATGGTTGTTAGCTGAGATTGCCGTCATTGCCGCAGATATTCCTGAAGGCATTTTTATTACATACTCCCTTAGGACAGCCTTTGCATTGAATATACTTTTCAAAGTACCAGTATGGGCTGGAGTGCTCTTCACAGGTTTGAGCACCCTCTTGCTTCTTGGCCTCCAGAGATACGGGGTGAGGAAGTTGGAGATGTTGATAGCAGGGCTGGTATTCATAATGGCAGGGTGCTTCTTTGCCGAAATGAGTTATGTGAAGCCTCCGGCTTCAAGGGTGATAAAGGGCATGTTAATCCCCAAACTCAAAGGTTCGACCGCCACCACTGATGCCATTGCGCTTTTCGGTGCTCTCGTCATGCCTCACAACCTCTTTCTCCATTCTGCCCTTGTACTCTCTAGAAAGGTGCCCAATTCAGTCCGTGGCGTCAATGAAGCATGTCGATATTTCTTGATAGAGAGTGGAATGGCATTGATGGTAGCATTTTGTATCAATGTTGCAGTTGTTTCTGTGTCAGGCACTATTTGCTCTGTAAACAATCTTTCAAGAGAAAACATGGATCAATGCAGTGATCTCAATCTTAATTCTGCTTCTTTTCTTCTCAAGAATGTGTTGGGAGGGTCAAGCAAGGTGGTCTATGCTATTGCATTGTTTGCCTCAGGCCAAAGTTCCACCATCACAGGCACTTATGCTGGACAATATATCATGCAGGGTTTCTTGAATCTTAAGATGAAGAGATGGCTAAGGAACCTAATGACTAGGTGCATTGCCATTACACCTAGCCTCATTGTCTCCATTATTAGTGGATCTGCTGGGGCTGGCCGACTCATTATCATTGCATCAATGATACTGTCATTTGAACTTCCATTTGCTCTAATCCCACTCCTGAAATTCAGTAGCAGTAGCACCAAGATGGGCCCTCACAAGAATTCAATATATGTTATAGTGTTCTCATGGATATTGGGATTTGGACTGATGGGCATCAACATTTACTACTTAGCCACAGGCTTTGTGAATTGGCTACTCCATAATGATCTTCCCAAGGTGGGAAATGTGTTTATTGGGATCATAGTGTTTCCTCTCATGGCAGTCTATGTCCTTGCAGTCCTCTATCTCACCTTTCGAAAAGACACTGTGGTGACCTTCATTGAAGCAGAGAAGGATGAGCACAGAATTATCAACATCTATGACCACGGTGATTGGCTAACCTGGAACGTGAACACCTGTGTTGAGCGTCCACACCAACCATCCGTGTCGAAGATATCTCATCATGAGGAATATTTTCAGTTGTCCGCAGTTACCGGTCAAGCCAATAAATGA 1608 44.09 MLKESNQIFISNKPGWRNFLAFVGPGFLVSLAYLDPGNLETDLQAGSNHGYELLWVVLIGLIFALVIQSLAANLGVITGKHLSELCRAEYPKYVKYCLWLLAEIAVIAADIPEGIFITYSLRTAFALNILFKVPVWAGVLFTGLSTLLLLGLQRYGVRKLEMLIAGLVFIMAGCFFAEMSYVKPPASRVIKGMLIPKLKGSTATTDAIALFGALVMPHNLFLHSALVLSRKVPNSVRGVNEACRYFLIESGMALMVAFCINVAVVSVSGTICSVNNLSRENMDQCSDLNLNSASFLLKNVLGGSSKVVYAIALFASGQSSTITGTYAGQYIMQGFLNLKMKRWLRNLMTRCIAITPSLIVSIISGSAGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYVIVFSWILGFGLMGINIYYLATGFVNWLLHNDLPKVGNVFIGIIVFPLMAVYVLAVLYLTFRKDTVVTFIEAEKDEHRIINIYDHGDWLTWNVNTCVERPHQPSVSKISHHEEYFQLSAVTGQANK* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2521401 2542260 + Vvi18g234 Vvi18g234 779937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g234 535 Hamap Divalent metal cation transporter MntH [mntH]. 10 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PRINTS Natural resistance-associated macrophage protein signature 98 124 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PRINTS Natural resistance-associated macrophage protein signature 157 178 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PRINTS Natural resistance-associated macrophage protein signature 207 230 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PRINTS Natural resistance-associated macrophage protein signature 317 336 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PRINTS Natural resistance-associated macrophage protein signature 345 362 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PRINTS Natural resistance-associated macrophage protein signature 377 396 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 Pfam Natural resistance-associated macrophage protein 40 407 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 17 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 9 495 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi18g234 535 SUPERFAMILY Calcium ATPase, transmembrane domain M 39 456 IPR023298 -
Vvi18g234 535 PANTHER METAL TRANSPORTER NRAMP5 9 495 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g234 K21398 - vvi:100248879 875.159