Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g235 ATGTTTTTGGAGAATATATCGCATGGGCAGCTCCAGGCGTTGTCCGCCGTGCCGGCGGATAGTCCGTCTTTGGCGACGTCGGATCAGGAGAGATCGGATGGAGGTGGTTACGTGGTGGCGCCACCGCAGATTATGGAGGGGCGTGGTGTGATTAAGCGGTTTTGGAATGGTCGGGTTCATGCTGTTCCAATGCACTCAGATTGGTTTTCGCCTAACACAGTGCACAGATTGGAGAGACAAGTGGTTCCGCATTTTTTCTCTGGAAAGTCTCCAGACCATACGGCAGAGCTATACATGGAATGTAGGAACTTGATTGTTGCCAAGTACATGGAAGATCCAGAGAAAAGATTATCGGTTTCTGACTGTAAGGGCCTTGTGGCTGGCATTCAGGAGGAAGACTTGACCCGAATTGTTCGTTTCCTGGATCACTGGGGAATCATTAATTACTGTGCTTCTTCTGTGCCAAATCGTGAGCCTTGGAGTAGCACATCCTACCTAAGGGAGGATTCGAATGGTGAGGTTCATGTGCCATCGGCTGCTTTGAAGTCCATTGATAGTTTGATCAAATTCGACAAGCCCAAATGTAGGCTGAAGGCGGCTGAGGTGTACTCATCCTTGTCATGTAATGGTGATGAGGACTCCGACTTGGACTGCAAAATTCGAGAGAGGTTATCTGATAATCGTTGCAATTATTGCTCTCGACCTCTTCCAATTGGGTATTATCAATCACAGAAGGAGGTCGATGTAATGCTATGCACAGATTGCTTCTATGAAGGGAGGTTTGTAACTGGTCATTCAAGTATAGATTTTATACGGTTGGATTCCACAAAAGATTATGGTGACATTGATAGCGAAAGTTGGAGTGATCAGGAGACTTTACTCCTGCTTGAAGCAATGGAATCTTATAATGAGAACTGGAATGACATTGCAGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATCCTTCATTTTATTCGTATGCCCATGGAGGATGGCCTACTTGAGAATATTGAAGTTCCAAGCATGCCAACTTTATCTAATTCTTTGAATAAAGTTGATCAGGAAAGATCACATTCAAATTCAAATGGGAATTTAGCAGGATCTTGTCTCCCTGGCCTTGATTCTGATAGTAGGCTCCCTTTTGCAAATTCTGGAAATCCAGTTATGTCCATGGTTGCCTTTCTAGCCACCGCTGTTGGACCACGAGTTGCCGCAGCCTGTGCCCATGCATCCTTGATAGCATTGTCTGAGGAAAACGCTTTAGCTGCTGCTTCTGGATTCATCATACCGCCGGAAGGATCTGGACATGGAAATAGGATGAAAGAAGGTGGTCCACATGGAGAGCTGACAAATTCAAGTCAGCACCAAGATGGAAACATAGCAATACAAGGCTCATGGGGTCAAAATGATGCAGAGGTTGCTTCATTACCTGTTGAAAAAGTTAGAGCTGCTGCAAAAGCTGGTCTTGCTGCAGCAGCGATGAAGGCAAAACTGTTTGCTGATCATGAAGAAAGGGAAATTCAGAGGCTTTCTGCCAATATTATTAATCATCAGTTGAAGAGATTAGAGCTGAAGCTGAAGCAATTTGCAGAAGTGGAAACCTTGTTGATGAAAGAATGTGAACAGGTGGAGAGGGCAAGACAAAGGTTTGCGGCTGAGCGAGCCCGCATTATATCGACCCGGTTTGGACCAACCGGAGTCACTTCACCTATGAATCTTCCAGGTGTTGCTCCTGCTTTGGTTAGTAACAACACTGGCAACAATAGGCAACAAATCATATCAGCCTCACCTTCACAGCCAAGCATTTCTGGGTACGGTAATAACCAACAAATGCATCCACACATGTCGTTCATGCCGCGGCAGCCTATGTTTTCATTTGGACCACGCCTGCCCCTTGCAGCCATACAGCCATCCTCATCAACTCCTTCTCCAAATGCCATGTTTAACAATTCGGGTAATTCACAGCCTACTCTCAATCATCCAATGATGAGGCCTGTATCAGGGACTAGCTCTGGTTTAGGTTGA 2028 45.71 MFLENISHGQLQALSAVPADSPSLATSDQERSDGGGYVVAPPQIMEGRGVIKRFWNGRVHAVPMHSDWFSPNTVHRLERQVVPHFFSGKSPDHTAELYMECRNLIVAKYMEDPEKRLSVSDCKGLVAGIQEEDLTRIVRFLDHWGIINYCASSVPNREPWSSTSYLREDSNGEVHVPSAALKSIDSLIKFDKPKCRLKAAEVYSSLSCNGDEDSDLDCKIRERLSDNRCNYCSRPLPIGYYQSQKEVDVMLCTDCFYEGRFVTGHSSIDFIRLDSTKDYGDIDSESWSDQETLLLLEAMESYNENWNDIAEHVGTKSKAQCILHFIRMPMEDGLLENIEVPSMPTLSNSLNKVDQERSHSNSNGNLAGSCLPGLDSDSRLPFANSGNPVMSMVAFLATAVGPRVAAACAHASLIALSEENALAAASGFIIPPEGSGHGNRMKEGGPHGELTNSSQHQDGNIAIQGSWGQNDAEVASLPVEKVRAAAKAGLAAAAMKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKECEQVERARQRFAAERARIISTRFGPTGVTSPMNLPGVAPALVSNNTGNNRQQIISASPSQPSISGYGNNQQMHPHMSFMPRQPMFSFGPRLPLAAIQPSSSTPSPNAMFNNSGNSQPTLNHPMMRPVSGTSSGLG* 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2543732 2568290 - Vvi18g235 Vvi18g235 779938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g235 675 PANTHER SWI/SNF COMPLEX-RELATED 30 674 - -
Vvi18g235 675 SUPERFAMILY Homeodomain-like 284 334 IPR009057 -
Vvi18g235 675 SUPERFAMILY Homeodomain-like 59 161 IPR009057 -
Vvi18g235 675 MobiDBLite consensus disorder prediction 635 675 - -
Vvi18g235 675 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 30 674 - -
Vvi18g235 675 MobiDBLite consensus disorder prediction 351 370 - -
Vvi18g235 675 Pfam SWIRM-associated region 1 488 561 IPR032451 -
Vvi18g235 675 Gene3D - 283 333 - -
Vvi18g235 675 Coils Coil 501 521 - -
Vvi18g235 675 ProSiteProfiles Zinc finger ZZ-type profile. 224 278 IPR000433 GO:0008270
Vvi18g235 675 ProSiteProfiles SWIRM domain profile. 60 158 IPR007526 GO:0005515
Vvi18g235 675 CDD SANT 286 328 IPR001005 -
Vvi18g235 675 ProSiteProfiles Myb-like domain profile. 279 329 IPR001005 -
Vvi18g235 675 Pfam Myb-like DNA-binding domain 285 326 IPR001005 -
Vvi18g235 675 Pfam SWIRM domain 63 149 IPR007526 GO:0005515
Vvi18g235 675 Gene3D - 66 153 IPR036388 -
Vvi18g235 675 MobiDBLite consensus disorder prediction 634 675 - -
Vvi18g235 675 SMART sant 283 331 IPR001005 -
Vvi18g235 675 ProSiteProfiles SANT domain profile. 282 333 IPR017884 -
Vvi18g235 675 MobiDBLite consensus disorder prediction 17 38 - -
Vvi18g235 675 MobiDBLite consensus disorder prediction 351 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g235 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - vvi:100253973 1321.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37