Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g236 ATGGTGGATTTTGTTTCGTCGTTGGGAAATTATCTGGGGAGTGTTGGGGGTTTTGATTTTTACGAGTTCCCATCTCTGGATCGGCTATCCATGGTTTCAGAGGAAGATTTTAGAGAGGCTGGCTTCGGTTACAGGGCCAAATACATAATTGGCACTGTCAAAGCTTTGCAGTCAAAGTCTGGTGGAGGCATAGAGTGGCTTGCTTCCCTTCGTGAAATGGACCTTCAAGAGGTGGTTGATGCCCTTTCCACTCTACCTGGTGTTGGTCCCAAGGTGGCAGCATGCATTGCTCTCTTTTCACTGGATCAGCATCATGCCATTCCTGTTGATACGCATGTGTGGCAGATTGCTACCAGATATCTCATCCCTGAGCTTGCAGGTGCCCGTCTGACACCTAAGCTTTGCAGTCGTGTGGCAGATGCATTTGTGAGCAAATATGGGAAATATGCTGGTTGGGCACAAACTCTACTCTTCATTGCTGAATTACCTTCACAAAAGACAATTCTACCACCAAAATTTTGGGCTATTGAGGAGAATAAAGACACTAACATAAAAGCTAGTACAACAGGTAATGGACCTTGTGGTAGTAGCCTGAGTATAACTAAAAGTTGCTAA 615 45.2 MVDFVSSLGNYLGSVGGFDFYEFPSLDRLSMVSEEDFREAGFGYRAKYIIGTVKALQSKSGGGIEWLASLREMDLQEVVDALSTLPGVGPKVAACIALFSLDQHHAIPVDTHVWQIATRYLIPELAGARLTPKLCSRVADAFVSKYGKYAGWAQTLLFIAELPSQKTILPPKFWAIEENKDTNIKASTTGNGPCGSSLSITKSC* 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2573309 2584523 + Vvi18g236 Vvi18g236 779939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g236 204 SUPERFAMILY DNA-glycosylase 3 160 IPR011257 GO:0003824|GO:0006281
Vvi18g236 204 SMART endo3end 2 162 IPR003265 GO:0006284
Vvi18g236 204 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 1 178 - -
Vvi18g236 204 Gene3D - 100 163 IPR023170 -
Vvi18g236 204 CDD ENDO3c 24 159 IPR003265 GO:0006284
Vvi18g236 204 PANTHER N-GLYCOSYLASE/DNA LYASE 1 178 - -
Vvi18g236 204 Pfam HhH-GPD superfamily base excision DNA repair protein 19 120 IPR003265 GO:0006284
Vvi18g236 204 Gene3D Hypothetical protein; domain 2 1 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g236 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] - vvi:100264280 381.333
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g236 . . . . . . . . . Cmo15g00669 . . . . Sed01g3102 . . Bhi04g01882 Tan11g1252 Cmetu03g0437 . Hepe02g2230 . Lcy10g1243 Cla08g00614 Cam08g1028 Cec08g0617 Cco08g0729 Clacu08g0738 . Cre08g0546 . . . . . . . Cme03g00519 . Blo18g00178 . Bda01g01453 Bpe02g01649 . Bma01g00806 . . . . . . . Car15g00609 . . . . . . . . . . . . . . . . Lsi08g00454 . Chy03g00766 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008522 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35