Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g24 | ATGGAAGAGGTTGGTGCGCAAGTGGCTCCTCCAATTTTCATCCACCAGACGCTTTCAAGTCGATTCCATGAAGCTGTTCCCATGGCAAAGAAACGGGATCTGCCGTATCCAAGCTCTAATTTTCAACATCAGCATCCGCAGCGGTTTCAAAACCCTAGAGACAATTGGAACCCCAAGGTCTGGGATTGGGACAGTGTGAGGTTCGTTGCTAATCCGTTGGAATCGGAGCTGCTGCGCCTGGGTACTGCAACTCCGAGCCTTAGGCTGAAGCTGGGTGGGGGCTTGAGCTCAATTGAGGAGCCAGTGTCCAGGCCGAGCAAAAGGGTTCGCTCTGGATCTCCCGGCAGTAGCAGCTATCCGATGTGTCAGGTTGATAACTGTAGAGAAGATCTCTCAAATGCGAAAGACTATCACCGGCGGCATAAGGTGTGTGAGATGCATAGCAAATCCACCAAAGCCTTAGTGGGGAAGCAGATGCAAAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCACTTTCAGAGTTTGATGAGGGAAAGAGAAGCTGCAGGAGGAGACTTGCTGGGCACAACCGGCGCAGAAGGAAAACCCAGCCAGAGGATGTTAGCTCACGCCTGCTACTCCCTGGAAACCGGGACAACACTGGCAATAGAAATTTGGATATCGTTAACTTATTGACAGCTTTAGCTCGTACACAAGGGAACAATGAGGTCAAAAGTGCGAATAACTCATCTGTACCAGATAGAGACCAACTCATTCAAATTCTTAGCAAGTTAAACTCGCTACCTTTGCCAGCAGATTTTGCGGCAAAGCTGCCAATTTCTGGAAGTTTAAATAGGAATACACCAGGACAGTCATCTTCAGAACATCAAAACAGATTGAATGGAAAGACATCTTCTCCATCAACCATGGACTTGCTTGCTGTTCTTTCAGCCACTCTAGCAGCTTCTGCTCCTGATGCCCTTGCATTTCTATCTCAAAGGAGCAGTCAAAGCAGTGACAGTGAGAAAACTAACTACCAGTCTCCTATGGAAGATTCAGATTGCCAGTACTTTTCATCTGACAGCAGTAATCCCATGGAAGAGAGGTCTCCTTCATCTTCTCCGCCTGTGGTGCAAAAGCTAGGAGCTGACAATGGTGCTGTCCAAAGTTTTCCTTACCAAGCAGGGTACACTTCTTCATCTGGGTCTGATCATTCACCTTCTAGTTTGAATTCTGATGCTCAGGATCGTACTGGGCGGATAATTTTCAAACTATTTGACAAGGATCCCAGTCATTTCCCAGGGACATTGCGAACAGAGATCTACAATTGGCTTGCTCACAGTCCATCAGAAATGGAGAGCTACATAAGGCCAGGATGTGTGGTTCTATCAGTTTATGCATCAATGTCATCAGCTGCCTGGGAGCAACTTGAAGAAAACCTTCTTCACCGGGTCAATTCCTTGGTTCAAGATTCAGATTCCGACTTTTGGAGAAATGGAAGATTCTTAGTTCATACAGGCAGGGAATTAGCATCACATAAAGATGGAAAGATTCGTTTATGCAAATCCTGGAGAACATGGAATTCCCCAGAGTTGATCTCAGTGTCCCCATTGGCGGTTGTGGGTGGACAGGAGACCTCTTTTTTATTGAAGGGAAGAAATCTTGCTAATCCTGGAACCAAGATTCATTGCACATATATGGGTGGATACACATCAAAGGAAGTTCCAGGATTAGCCCGCCAGGGAACTGTATACGATGAGATAAGCTTTGGCAGCTTTAAAATTAATGATGCAATTCCTAGTGTTTTAGGGCGGTGTTTCATTGAGGTGGAAAATGGTTTCAGAGGCAACAGCTTTCCTGTAATAGTAGCTGATGCCACTATTTGTAAGGAGTTGAGACTCCTTGAATCAGAATTTGATGAAGAGGCAAAAGTTTCTAGGGAAGAAGTTCTGCACTTCTTAAATGAACTTGGATGGCTATTCCAAAGGAAGTTTTCTATGCTTGCAGGTCCGGATTATTCCCTTGCTCGGTTCAAATTTCTGTTCACATTTTCAGTTGAGAGGGACTGCTGTGCCTTGGTCAAAACACTTCTAGACATACTGGTGGAAAGAAACTTGGGCAGTGATGGGCTATCAAGCAAGTCTTTGGAGACACTGTCAGAGGTTCAGCTCTTGAGCAGGGCAGTCAAAAGGAGGTACAGGAAAATGGTTGACTTGCTTATCCATTATTCTGTGGCTAGCAGTTCATCCAAGAAATACATTTTCCCACCTAATCTCGTGGGAGCTGGTGGTATTACCCCTCTACATTTGGCTGCTTGTACTGCGGGGTCGGATGATATCATTGATGCTCTGACAAGTGACCCACAAGAGATTGGATTGCACTCCTGGAATTCCCTTTTGGATGCTAGTGGGCAATCTCCATATGCATACGCTATGATGAGGAACAACCACTCTTATAACAGGTTGGTAGCGCGTAAACTTGCTGACAGAAGGAATGGTCAAGTCTCTTTATCAATTGAAAATGCGATGGAGCAACCATGGCCGAAAGTAGGGCAGGAGCAACATTTTGGACAAGGACGCAGTTCTTGTGCCAAGTGTGCAGTTGTGGCAGCAAAATACAGCAGGAGGATGCCAGGTTCACAAGGCTTGCTTCACCGTCCCTACATTCATTCAATGCTCGCCATTGCTGCTGTCTGTGTTTGTGTTTGCCTGTTCTTGCGTGGCTCCCCAGACATTGGCTTGGTTGCTCCTTTCAAGTGGGAGAATTTGGATTATGGTACAAGTTAG | 2766 | 46.17 | MEEVGAQVAPPIFIHQTLSSRFHEAVPMAKKRDLPYPSSNFQHQHPQRFQNPRDNWNPKVWDWDSVRFVANPLESELLRLGTATPSLRLKLGGGLSSIEEPVSRPSKRVRSGSPGSSSYPMCQVDNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVSSRLLLPGNRDNTGNRNLDIVNLLTALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFAAKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPSTMDLLAVLSATLAASAPDALAFLSQRSSQSSDSEKTNYQSPMEDSDCQYFSSDSSNPMEERSPSSSPPVVQKLGADNGAVQSFPYQAGYTSSSGSDHSPSSLNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNWLAHSPSEMESYIRPGCVVLSVYASMSSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLVHTGRELASHKDGKIRLCKSWRTWNSPELISVSPLAVVGGQETSFLLKGRNLANPGTKIHCTYMGGYTSKEVPGLARQGTVYDEISFGSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVADATICKELRLLESEFDEEAKVSREEVLHFLNELGWLFQRKFSMLAGPDYSLARFKFLFTFSVERDCCALVKTLLDILVERNLGSDGLSSKSLETLSEVQLLSRAVKRRYRKMVDLLIHYSVASSSSKKYIFPPNLVGAGGITPLHLAACTAGSDDIIDALTSDPQEIGLHSWNSLLDASGQSPYAYAMMRNNHSYNRLVARKLADRRNGQVSLSIENAMEQPWPKVGQEQHFGQGRSSCAKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGTS* | 922 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 347644 | 353985 | - | Vvi18g24 | Vvi18g24 | 779727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g24 | 921 | MobiDBLite | consensus disorder prediction | 92 | 120 | - | - | |
Vvi18g24 | 921 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 35 | 344 | IPR044817 | GO:0003677 | |
Vvi18g24 | 921 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 376 | 920 | IPR044817 | GO:0003677 | |
Vvi18g24 | 921 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 342 | 374 | IPR044817 | GO:0003677 | |
Vvi18g24 | 921 | MobiDBLite | consensus disorder prediction | 384 | 406 | - | - | |
Vvi18g24 | 921 | MobiDBLite | consensus disorder prediction | 188 | 213 | - | - | |
Vvi18g24 | 921 | Gene3D | - | 112 | 183 | IPR036893 | GO:0003677|GO:0005634 | |
Vvi18g24 | 921 | SUPERFAMILY | Ankyrin repeat | 720 | 816 | IPR036770 | - | |
Vvi18g24 | 921 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 | 376 | 920 | - | - | |
Vvi18g24 | 921 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 | 342 | 374 | - | - | |
Vvi18g24 | 921 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 | 35 | 344 | - | - | |
Vvi18g24 | 921 | SUPERFAMILY | SBT domain | 120 | 200 | IPR036893 | GO:0003677|GO:0005634 | |
Vvi18g24 | 921 | MobiDBLite | consensus disorder prediction | 325 | 406 | - | - | |
Vvi18g24 | 921 | Gene3D | - | 674 | 847 | IPR036770 | - | |
Vvi18g24 | 921 | MobiDBLite | consensus disorder prediction | 274 | 299 | - | - | |
Vvi18g24 | 921 | MobiDBLite | consensus disorder prediction | 325 | 372 | - | - | |
Vvi18g24 | 921 | Pfam | SBP domain | 122 | 195 | IPR004333 | GO:0003677 | |
Vvi18g24 | 921 | ProSiteProfiles | Zinc finger SBP-type profile. | 119 | 196 | IPR004333 | GO:0003677 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14310 | PF03110 | SBP | 2.10E-29 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g24 | - | - | vvi:100240978 | 1721.83 |