Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g24 ATGGAAGAGGTTGGTGCGCAAGTGGCTCCTCCAATTTTCATCCACCAGACGCTTTCAAGTCGATTCCATGAAGCTGTTCCCATGGCAAAGAAACGGGATCTGCCGTATCCAAGCTCTAATTTTCAACATCAGCATCCGCAGCGGTTTCAAAACCCTAGAGACAATTGGAACCCCAAGGTCTGGGATTGGGACAGTGTGAGGTTCGTTGCTAATCCGTTGGAATCGGAGCTGCTGCGCCTGGGTACTGCAACTCCGAGCCTTAGGCTGAAGCTGGGTGGGGGCTTGAGCTCAATTGAGGAGCCAGTGTCCAGGCCGAGCAAAAGGGTTCGCTCTGGATCTCCCGGCAGTAGCAGCTATCCGATGTGTCAGGTTGATAACTGTAGAGAAGATCTCTCAAATGCGAAAGACTATCACCGGCGGCATAAGGTGTGTGAGATGCATAGCAAATCCACCAAAGCCTTAGTGGGGAAGCAGATGCAAAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCACTTTCAGAGTTTGATGAGGGAAAGAGAAGCTGCAGGAGGAGACTTGCTGGGCACAACCGGCGCAGAAGGAAAACCCAGCCAGAGGATGTTAGCTCACGCCTGCTACTCCCTGGAAACCGGGACAACACTGGCAATAGAAATTTGGATATCGTTAACTTATTGACAGCTTTAGCTCGTACACAAGGGAACAATGAGGTCAAAAGTGCGAATAACTCATCTGTACCAGATAGAGACCAACTCATTCAAATTCTTAGCAAGTTAAACTCGCTACCTTTGCCAGCAGATTTTGCGGCAAAGCTGCCAATTTCTGGAAGTTTAAATAGGAATACACCAGGACAGTCATCTTCAGAACATCAAAACAGATTGAATGGAAAGACATCTTCTCCATCAACCATGGACTTGCTTGCTGTTCTTTCAGCCACTCTAGCAGCTTCTGCTCCTGATGCCCTTGCATTTCTATCTCAAAGGAGCAGTCAAAGCAGTGACAGTGAGAAAACTAACTACCAGTCTCCTATGGAAGATTCAGATTGCCAGTACTTTTCATCTGACAGCAGTAATCCCATGGAAGAGAGGTCTCCTTCATCTTCTCCGCCTGTGGTGCAAAAGCTAGGAGCTGACAATGGTGCTGTCCAAAGTTTTCCTTACCAAGCAGGGTACACTTCTTCATCTGGGTCTGATCATTCACCTTCTAGTTTGAATTCTGATGCTCAGGATCGTACTGGGCGGATAATTTTCAAACTATTTGACAAGGATCCCAGTCATTTCCCAGGGACATTGCGAACAGAGATCTACAATTGGCTTGCTCACAGTCCATCAGAAATGGAGAGCTACATAAGGCCAGGATGTGTGGTTCTATCAGTTTATGCATCAATGTCATCAGCTGCCTGGGAGCAACTTGAAGAAAACCTTCTTCACCGGGTCAATTCCTTGGTTCAAGATTCAGATTCCGACTTTTGGAGAAATGGAAGATTCTTAGTTCATACAGGCAGGGAATTAGCATCACATAAAGATGGAAAGATTCGTTTATGCAAATCCTGGAGAACATGGAATTCCCCAGAGTTGATCTCAGTGTCCCCATTGGCGGTTGTGGGTGGACAGGAGACCTCTTTTTTATTGAAGGGAAGAAATCTTGCTAATCCTGGAACCAAGATTCATTGCACATATATGGGTGGATACACATCAAAGGAAGTTCCAGGATTAGCCCGCCAGGGAACTGTATACGATGAGATAAGCTTTGGCAGCTTTAAAATTAATGATGCAATTCCTAGTGTTTTAGGGCGGTGTTTCATTGAGGTGGAAAATGGTTTCAGAGGCAACAGCTTTCCTGTAATAGTAGCTGATGCCACTATTTGTAAGGAGTTGAGACTCCTTGAATCAGAATTTGATGAAGAGGCAAAAGTTTCTAGGGAAGAAGTTCTGCACTTCTTAAATGAACTTGGATGGCTATTCCAAAGGAAGTTTTCTATGCTTGCAGGTCCGGATTATTCCCTTGCTCGGTTCAAATTTCTGTTCACATTTTCAGTTGAGAGGGACTGCTGTGCCTTGGTCAAAACACTTCTAGACATACTGGTGGAAAGAAACTTGGGCAGTGATGGGCTATCAAGCAAGTCTTTGGAGACACTGTCAGAGGTTCAGCTCTTGAGCAGGGCAGTCAAAAGGAGGTACAGGAAAATGGTTGACTTGCTTATCCATTATTCTGTGGCTAGCAGTTCATCCAAGAAATACATTTTCCCACCTAATCTCGTGGGAGCTGGTGGTATTACCCCTCTACATTTGGCTGCTTGTACTGCGGGGTCGGATGATATCATTGATGCTCTGACAAGTGACCCACAAGAGATTGGATTGCACTCCTGGAATTCCCTTTTGGATGCTAGTGGGCAATCTCCATATGCATACGCTATGATGAGGAACAACCACTCTTATAACAGGTTGGTAGCGCGTAAACTTGCTGACAGAAGGAATGGTCAAGTCTCTTTATCAATTGAAAATGCGATGGAGCAACCATGGCCGAAAGTAGGGCAGGAGCAACATTTTGGACAAGGACGCAGTTCTTGTGCCAAGTGTGCAGTTGTGGCAGCAAAATACAGCAGGAGGATGCCAGGTTCACAAGGCTTGCTTCACCGTCCCTACATTCATTCAATGCTCGCCATTGCTGCTGTCTGTGTTTGTGTTTGCCTGTTCTTGCGTGGCTCCCCAGACATTGGCTTGGTTGCTCCTTTCAAGTGGGAGAATTTGGATTATGGTACAAGTTAG 2766 46.17 MEEVGAQVAPPIFIHQTLSSRFHEAVPMAKKRDLPYPSSNFQHQHPQRFQNPRDNWNPKVWDWDSVRFVANPLESELLRLGTATPSLRLKLGGGLSSIEEPVSRPSKRVRSGSPGSSSYPMCQVDNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVSSRLLLPGNRDNTGNRNLDIVNLLTALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFAAKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPSTMDLLAVLSATLAASAPDALAFLSQRSSQSSDSEKTNYQSPMEDSDCQYFSSDSSNPMEERSPSSSPPVVQKLGADNGAVQSFPYQAGYTSSSGSDHSPSSLNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNWLAHSPSEMESYIRPGCVVLSVYASMSSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLVHTGRELASHKDGKIRLCKSWRTWNSPELISVSPLAVVGGQETSFLLKGRNLANPGTKIHCTYMGGYTSKEVPGLARQGTVYDEISFGSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVADATICKELRLLESEFDEEAKVSREEVLHFLNELGWLFQRKFSMLAGPDYSLARFKFLFTFSVERDCCALVKTLLDILVERNLGSDGLSSKSLETLSEVQLLSRAVKRRYRKMVDLLIHYSVASSSSKKYIFPPNLVGAGGITPLHLAACTAGSDDIIDALTSDPQEIGLHSWNSLLDASGQSPYAYAMMRNNHSYNRLVARKLADRRNGQVSLSIENAMEQPWPKVGQEQHFGQGRSSCAKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGTS* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 347644 353985 - Vvi18g24 Vvi18g24 779727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g24 921 MobiDBLite consensus disorder prediction 92 120 - -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 344 IPR044817 GO:0003677
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 376 920 IPR044817 GO:0003677
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 342 374 IPR044817 GO:0003677
Vvi18g24 921 MobiDBLite consensus disorder prediction 384 406 - -
Vvi18g24 921 MobiDBLite consensus disorder prediction 188 213 - -
Vvi18g24 921 Gene3D - 112 183 IPR036893 GO:0003677|GO:0005634
Vvi18g24 921 SUPERFAMILY Ankyrin repeat 720 816 IPR036770 -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 376 920 - -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 342 374 - -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 35 344 - -
Vvi18g24 921 SUPERFAMILY SBT domain 120 200 IPR036893 GO:0003677|GO:0005634
Vvi18g24 921 MobiDBLite consensus disorder prediction 325 406 - -
Vvi18g24 921 Gene3D - 674 847 IPR036770 -
Vvi18g24 921 MobiDBLite consensus disorder prediction 274 299 - -
Vvi18g24 921 MobiDBLite consensus disorder prediction 325 372 - -
Vvi18g24 921 Pfam SBP domain 122 195 IPR004333 GO:0003677
Vvi18g24 921 ProSiteProfiles Zinc finger SBP-type profile. 119 196 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g24 - - - vvi:100240978 1721.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g24 . . . . . . . . . . Cma01g02053 Cma09g00010 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02436 Csa04g02750 . . Blo17g00912 . . . . . . . . Cmo01g02108 Cmo09g00010 . . . Car09g00010 . Cpe02g00006 . . . . . . . Cla11g01862 Cam11g1930 Cec11g1956 Cco11g1969 Clacu11g2095 Cmu11g1897 Cre11g2307 . . Chy07g00438 Cme07g00013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g464 ECH 155 861 SBP-box Gene Family AT2G47070 58.9 2.3e-242 835.5
Vvi5g250 . 149 981 SBP-box Gene Family AT2G47070 52.6 3.0e-221 765.4
Vvi11g804 . 4 158 SBP-box Gene Family AT1G27370 52.2 8.0e-40 161.8
Vvi7g464 ECH 1 861 SBP-box Gene Family AT3G60030 55.1 6.8e-268 920.6
Vvi18g24 . 1 920 SBP-box Gene Family AT1G20980 52.6 6.2e-278 954.1
Vvi11g804 . 1 158 SBP-box Gene Family AT5G43270 61.6 4.5e-49 192.6
Vvi5g384 . 8 685 SBP-box Gene Family AT5G18830 52.6 3.1e-195 679.1
Vvi7g464 ECH 155 861 SBP-box Gene Family AT2G47070 58.9 2.3e-242 835.5
Vvi5g250 . 149 981 SBP-box Gene Family AT2G47070 52.6 3.0e-221 765.4
Vvi11g804 . 1 158 SBP-box Gene Family AT5G43270 61.6 4.5e-49 192.6
Vvi5g384 . 8 685 SBP-box Gene Family AT5G18830 52.6 3.1e-195 679.1
Vvi11g804 . 4 158 SBP-box Gene Family AT1G27370 52.2 8.0e-40 161.8
Vvi7g464 ECH 1 861 SBP-box Gene Family AT3G60030 55.1 6.8e-268 920.6
Vvi18g24 . 1 920 SBP-box Gene Family AT1G20980 52.6 6.2e-278 954.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012096 0 1 1 0 0 0 1 0 0 1 1 0 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 3 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14310 PF03110 SBP 2.10E-29 No_clan Vvi TF