Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g24 ATGGAAGAGGTTGGTGCGCAAGTGGCTCCTCCAATTTTCATCCACCAGACGCTTTCAAGTCGATTCCATGAAGCTGTTCCCATGGCAAAGAAACGGGATCTGCCGTATCCAAGCTCTAATTTTCAACATCAGCATCCGCAGCGGTTTCAAAACCCTAGAGACAATTGGAACCCCAAGGTCTGGGATTGGGACAGTGTGAGGTTCGTTGCTAATCCGTTGGAATCGGAGCTGCTGCGCCTGGGTACTGCAACTCCGAGCCTTAGGCTGAAGCTGGGTGGGGGCTTGAGCTCAATTGAGGAGCCAGTGTCCAGGCCGAGCAAAAGGGTTCGCTCTGGATCTCCCGGCAGTAGCAGCTATCCGATGTGTCAGGTTGATAACTGTAGAGAAGATCTCTCAAATGCGAAAGACTATCACCGGCGGCATAAGGTGTGTGAGATGCATAGCAAATCCACCAAAGCCTTAGTGGGGAAGCAGATGCAAAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCACTTTCAGAGTTTGATGAGGGAAAGAGAAGCTGCAGGAGGAGACTTGCTGGGCACAACCGGCGCAGAAGGAAAACCCAGCCAGAGGATGTTAGCTCACGCCTGCTACTCCCTGGAAACCGGGACAACACTGGCAATAGAAATTTGGATATCGTTAACTTATTGACAGCTTTAGCTCGTACACAAGGGAACAATGAGGTCAAAAGTGCGAATAACTCATCTGTACCAGATAGAGACCAACTCATTCAAATTCTTAGCAAGTTAAACTCGCTACCTTTGCCAGCAGATTTTGCGGCAAAGCTGCCAATTTCTGGAAGTTTAAATAGGAATACACCAGGACAGTCATCTTCAGAACATCAAAACAGATTGAATGGAAAGACATCTTCTCCATCAACCATGGACTTGCTTGCTGTTCTTTCAGCCACTCTAGCAGCTTCTGCTCCTGATGCCCTTGCATTTCTATCTCAAAGGAGCAGTCAAAGCAGTGACAGTGAGAAAACTAACTACCAGTCTCCTATGGAAGATTCAGATTGCCAGTACTTTTCATCTGACAGCAGTAATCCCATGGAAGAGAGGTCTCCTTCATCTTCTCCGCCTGTGGTGCAAAAGCTAGGAGCTGACAATGGTGCTGTCCAAAGTTTTCCTTACCAAGCAGGGTACACTTCTTCATCTGGGTCTGATCATTCACCTTCTAGTTTGAATTCTGATGCTCAGGATCGTACTGGGCGGATAATTTTCAAACTATTTGACAAGGATCCCAGTCATTTCCCAGGGACATTGCGAACAGAGATCTACAATTGGCTTGCTCACAGTCCATCAGAAATGGAGAGCTACATAAGGCCAGGATGTGTGGTTCTATCAGTTTATGCATCAATGTCATCAGCTGCCTGGGAGCAACTTGAAGAAAACCTTCTTCACCGGGTCAATTCCTTGGTTCAAGATTCAGATTCCGACTTTTGGAGAAATGGAAGATTCTTAGTTCATACAGGCAGGGAATTAGCATCACATAAAGATGGAAAGATTCGTTTATGCAAATCCTGGAGAACATGGAATTCCCCAGAGTTGATCTCAGTGTCCCCATTGGCGGTTGTGGGTGGACAGGAGACCTCTTTTTTATTGAAGGGAAGAAATCTTGCTAATCCTGGAACCAAGATTCATTGCACATATATGGGTGGATACACATCAAAGGAAGTTCCAGGATTAGCCCGCCAGGGAACTGTATACGATGAGATAAGCTTTGGCAGCTTTAAAATTAATGATGCAATTCCTAGTGTTTTAGGGCGGTGTTTCATTGAGGTGGAAAATGGTTTCAGAGGCAACAGCTTTCCTGTAATAGTAGCTGATGCCACTATTTGTAAGGAGTTGAGACTCCTTGAATCAGAATTTGATGAAGAGGCAAAAGTTTCTAGGGAAGAAGTTCTGCACTTCTTAAATGAACTTGGATGGCTATTCCAAAGGAAGTTTTCTATGCTTGCAGGTCCGGATTATTCCCTTGCTCGGTTCAAATTTCTGTTCACATTTTCAGTTGAGAGGGACTGCTGTGCCTTGGTCAAAACACTTCTAGACATACTGGTGGAAAGAAACTTGGGCAGTGATGGGCTATCAAGCAAGTCTTTGGAGACACTGTCAGAGGTTCAGCTCTTGAGCAGGGCAGTCAAAAGGAGGTACAGGAAAATGGTTGACTTGCTTATCCATTATTCTGTGGCTAGCAGTTCATCCAAGAAATACATTTTCCCACCTAATCTCGTGGGAGCTGGTGGTATTACCCCTCTACATTTGGCTGCTTGTACTGCGGGGTCGGATGATATCATTGATGCTCTGACAAGTGACCCACAAGAGATTGGATTGCACTCCTGGAATTCCCTTTTGGATGCTAGTGGGCAATCTCCATATGCATACGCTATGATGAGGAACAACCACTCTTATAACAGGTTGGTAGCGCGTAAACTTGCTGACAGAAGGAATGGTCAAGTCTCTTTATCAATTGAAAATGCGATGGAGCAACCATGGCCGAAAGTAGGGCAGGAGCAACATTTTGGACAAGGACGCAGTTCTTGTGCCAAGTGTGCAGTTGTGGCAGCAAAATACAGCAGGAGGATGCCAGGTTCACAAGGCTTGCTTCACCGTCCCTACATTCATTCAATGCTCGCCATTGCTGCTGTCTGTGTTTGTGTTTGCCTGTTCTTGCGTGGCTCCCCAGACATTGGCTTGGTTGCTCCTTTCAAGTGGGAGAATTTGGATTATGGTACAAGTTAG 2766 46.17 MEEVGAQVAPPIFIHQTLSSRFHEAVPMAKKRDLPYPSSNFQHQHPQRFQNPRDNWNPKVWDWDSVRFVANPLESELLRLGTATPSLRLKLGGGLSSIEEPVSRPSKRVRSGSPGSSSYPMCQVDNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVSSRLLLPGNRDNTGNRNLDIVNLLTALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFAAKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPSTMDLLAVLSATLAASAPDALAFLSQRSSQSSDSEKTNYQSPMEDSDCQYFSSDSSNPMEERSPSSSPPVVQKLGADNGAVQSFPYQAGYTSSSGSDHSPSSLNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNWLAHSPSEMESYIRPGCVVLSVYASMSSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLVHTGRELASHKDGKIRLCKSWRTWNSPELISVSPLAVVGGQETSFLLKGRNLANPGTKIHCTYMGGYTSKEVPGLARQGTVYDEISFGSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVADATICKELRLLESEFDEEAKVSREEVLHFLNELGWLFQRKFSMLAGPDYSLARFKFLFTFSVERDCCALVKTLLDILVERNLGSDGLSSKSLETLSEVQLLSRAVKRRYRKMVDLLIHYSVASSSSKKYIFPPNLVGAGGITPLHLAACTAGSDDIIDALTSDPQEIGLHSWNSLLDASGQSPYAYAMMRNNHSYNRLVARKLADRRNGQVSLSIENAMEQPWPKVGQEQHFGQGRSSCAKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGTS* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 347644 353985 - Vvi18g24 Vvi18g24 779727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g24 921 MobiDBLite consensus disorder prediction 92 120 - -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 344 IPR044817 GO:0003677
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 376 920 IPR044817 GO:0003677
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 342 374 IPR044817 GO:0003677
Vvi18g24 921 MobiDBLite consensus disorder prediction 384 406 - -
Vvi18g24 921 MobiDBLite consensus disorder prediction 188 213 - -
Vvi18g24 921 Gene3D - 112 183 IPR036893 GO:0003677|GO:0005634
Vvi18g24 921 SUPERFAMILY Ankyrin repeat 720 816 IPR036770 -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 376 920 - -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 342 374 - -
Vvi18g24 921 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 35 344 - -
Vvi18g24 921 SUPERFAMILY SBT domain 120 200 IPR036893 GO:0003677|GO:0005634
Vvi18g24 921 MobiDBLite consensus disorder prediction 325 406 - -
Vvi18g24 921 Gene3D - 674 847 IPR036770 -
Vvi18g24 921 MobiDBLite consensus disorder prediction 274 299 - -
Vvi18g24 921 MobiDBLite consensus disorder prediction 325 372 - -
Vvi18g24 921 Pfam SBP domain 122 195 IPR004333 GO:0003677
Vvi18g24 921 ProSiteProfiles Zinc finger SBP-type profile. 119 196 IPR004333 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14310 PF03110 SBP 2.10E-29 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g24 - - vvi:100240978 1721.83