Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g243 ATGCGAATGTCAAAGTCTCCCTCCCCTGAACCACAGGAGCCCATATCCTCATCACCTTCTCGGCCTAGGGAATCCAATGGAATATCGGGAATGGATGATCCAGAGAGTACAATGTCAAGAGTTGCTCATTTTGTTGAGCAGCTACATGCCAACATGTCATCACCACATGAAAAAGAGCTTATTACAGCCCGTTTACTAGGTATTGCAAGAGCAAGAAAGGATGCAAGGACACTCATTGGTACCCATGTTCAAGCAATGCCATTGTTTATATCTGTTCTCAGGAGTGGCACTCCTGTGGCAAAAGTTAATGTGGCTGCCACTCTTAGTGTTTTGTGTAAAGATGAAGATCTACGACTAAAGAACAAGCAAGACAAAGTAGTGGAGGGGTTTGTTACTGGGGCTTTGAGGAATCTATGTGGTGACAAGAATGGGTATTGGAAAGCTACACTTGAGGCTGGAGGAGTAGATATTATTGTGGGGCTTCTTTATTCTGATAATGCTGCTGCACAATCCAATGCTGCTTCTCTCTTGGCACGTCTGATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGATTCTGGAGCTGTTAAGGCGTTGCTTCGACTCCTGGGTCAGGAAAATGATATTTCTGTCCGTGCCAGTGCTGCTGATGCTTTGGAGGCTCTTTCTTCAAAGTCAACCAGAGCTAAGAAAGCTGTTGTGGATGCAGATGGTGTGCCAGTTCTCATTGGGGCTATAGTTGCTCCATCTAAAGAGTGCATGCAAGGGGAGTGTGGCCAAGCTCTACAGGGGCATGCAACACGAGCTCTAGCGAACATCTGCGGTGGGATGTCTGCTTTAATAATGTATCTTGGAGAACTTTCCCAATCCCCCCGATTAGCTGCACCAGTTGCTGATATAATTGGAGCTCTTGCCTATTCTCTAATGGTATTTGAGCAGCAATCTGGTGTTGAAGAAGAACCTTTTGATGTGACTCAGATTGAAGATATTCTAGTAATGCTACTAAAGCCCCGGGACAATAAGCTGGTTCAGGAGCGAGTTCTAGAGGCTCTGGCCAGCCTGTATAGTAACAAATATCTCTCAAGATGGATCAATCATGCTGAAGCAAAGAAAGTGCTCATTGCACTCATAACAATGGCTGCTGCTGATGCACAAGAGTATCTCATACTCGCTTTGACGAGCTTATGCTGTGATGGGGTGGGGCTCTGGGAAGCAATTGGAATGAGGGAAGGAATTCAGTTACTCATATCATTACTGGGCTTATCCAGTGAACAGCATCAAGAGTATGCTGTTCAGTTGCTGGCAATCTTGACTGACCAGGTTGATGACAGCAAGTGGGCTATCACTGCTGCTGGTGGGATTCCTCCTCTGGTGCAGCTACTAGAGATTGGATCTCAGAAGGCAAGGGAGGATGCAGCACATGTTTTGTGGAATTTGTGCTGTCACAGTGAAGACATCCGTGCCTGTGTTGAGAGTGCAGGAGCTGTCCCAGCATTCTTATGGCTCCTAAAAAGTGGTGGATTGAAAGGACAAGAAGCCTCAGCTATGGCTCTCGGAAAGCTTGTTCGCACAGCTGATTCTGCCACCATTAACCAATTATTAGCATTGCTCCTGGGAGATTCTCCAAGCTCTAAGGCCCACATAATCAGAGTTTTGGGTCATGTACTGACAATGGCATCACATGAAGATCTAGTGCATAAGGGTTCTGCTGCCAATAAAGGGCTGACATCTCTTGTCCAGGTTCTCAACTCCTCAAATGAAGAAACCCAAGAGTATGCAGCTTCTGTGTTGGCCGATCTATTCAGCACTAGACAAGATATCTGTGATAGTCTTGCAACTGATGAGATTGTGCATCCTTGCATGAAGCTTTTGACCAGTAAAACCCAAGTTATTGCAACTCAATCAGCTAGAGCCTTAGGTGCTCTCTCACGTCCAACCAAGGCTAAGGCTACAAACAAGATGTCCTATATTGCAGAGGGAGATGTCAAGCCTCTAATAAAGTTGGCTAAAACTTCTTCCATTGATGCTGCTGAGACTGCACATTTTCCAGTAGGTGATGTGCTCACAGGAAATGCTCAGTGCCGTTTTGCTGTTCTCGCACTTGTGGATTCCTTAAATTCAATGGATTTGGATGGGACTGATGCTGCTGATGCTTTAGAAGTGGTTGCACTCTTGGCTAGGATGAAGCAGAGTGTGAACTTCACTTATTCTCCGTGGTCTGCTCTTGCTGAAGTCCCCTCAAGCTTGGAGTCCCTTGTGCGCTGCCTGGCTGAGGGACCTCCTCTGGTGCAAGATAAGGCAATAGAAATTCTATCTAGGCTTTGTGGGGATCAACCAGTTGTGCTTGGTGATCTTTTGGTTGCACAATCAAGATCCATTGGTTCACTTGCTAATAGAATAATGAATTCATCCAGTTTAGAAGTAAGAGTTGGAGGAACTGCCTTACTCATTTGTGCTGCGAAGGAACATAAACAGGCTGCAATGGATGCACTTGATGTATCAGGATATTTAAGACCTCTTATATATGCTTTGGTTGATATGATGAAGCAGAATTCTAGTTGTTCCTCTCTAGAAATTGAAGTGAGAACTCCTAGAGGATTTATGGAAAGAACTGCGTTTCAGGAAGGGATTGAGTTTGAGGTTCCTGACCCAGCCACTGTCTTGGGGGGCACTGTTGCCTTGTGGTTGATATCAATAATTTGTTCGTTTCATGCAAAGAGCAAAATCACTGTGATGGAAGCTGGTGGACTTGAGGCCCTCTCTGAGAAGCTTACAAGTTATGCTTCCAATCCACAGGCAGAGTTTGAGGATACTGAGGGTATATGGATTAGTGCTTTGCTCCTGGCTATTTTGTTCCAAGATGCAAATGTTGTTCTGGCCCCTGCAACCATGCGCATCATACCGTCACTTGCACTTTTAATGAAATCTGATGAAGTGATTGACAGATTCTTTGCTGCCCAGGCAATGGCTAGTCTTGTTTGTAATGGAAGTAGGGGAATAAATCTTACAATTGCAAATTCAGGTGCAGTTGCTGGGTTAATAACCCTAATTGGTTACATAGAATTAGATATGCCAAACCTTGTTGCTTTATCTGAAGAGTTTTGTCTGGTTAGGAAACCTGATCAAGTTGTTCTGGAAAATCTTTTTGAAATTGAAGACATAAGAGTTGGTTCCACTGCTCGCAAATCTATACCTCTATTAGTGGATCTTTTGAGACCAATTCCAGATAGGCCAGGTGCCCCTCCAATTGCTGTTCAACTATTGACTCGTATTGCAGATGGAAGTGATACAAACAAACTGATAATGGCTGAAGCTGGAGCATTGGATGCTCTAACCAAGTACTTGTCTTTGAGCCCTCAAGACTCTTCTGAGGCCTCAGTGTCTGAACTGTTGAGAATACTATTTAGCAATCCTGATCTTCTTCGTTACGAAGCATCAATCAGTTCCTTGAATCAACTAATAGCTGTGCTGCGTTTGGGGTCAAGAAATGCTAGATTCAGTGCTGCTAGAGCTTTGCATGAGCTTTTCGATGCTGAGAACATCAGAGATTCTGAGTTAGCTAGGCAGGCGGTTCAGCCCTTGGTTGACATGCTTAATGCTGCATCAGAGAGTGAGCAACAAGCTGCTCTTGTTGCCTTGATCAAGTTGACTATGGGAAATTCATCAAAAGCATCTTTGATGACAGACGTGGAGGGAAACCCCCTTGAGAGTCTTTACAAAATTTTATCATCTTCTACTTCATCCTTGGAACTAAAGGGAAATGCTGCACAACTTTGCTTTGTTTTGTTTAATATTCCAAAAATTCGAGCATTGCCGATGGCCTCTGAATGCATAGAACCCCTTATATTGTTGATGCAATCTGAGAGCAGCACAGCTGTAGAATCCAGCGTTTGTGCTTTTGAGAGATTGTTGGATGATGAACAACTAGTGGAGCTTGCAGCAGCTTATGATATTGTGGATCTCATTGTTAGCTTGGTTTCTGGATCAAACCATCAGCTCATTGAGACTTCCATTTGTGCTCTCACAAAGTTGGGGAAGGACCGAACTCCCCTCAAGTTAGATATGGTCAAAGCTGGCATTATTGATAATTGTCTTGAGCTACTCCCTGTTGCACCCAGTTCATTATGCTCCTCAATTGCGGAACTGTTCCGCATCTTAACAAATAGCAGTGCAATTTCTAAAGGCTCAGCTGCTGCAAGAATTGTGGAACCCCTTTTCATGGTCTTGCTTCGTCCAGATTTCAGTATGTGGGGACAGCATAGTGCTTTGCAAGCTCTTGTAAATATTTTGGAGAAACCACAAAGCCTTGCAACACTAAAACTTACTCCTAGCCAAGTCATTGAACCACTGATTTCATTTTTAGAGTCCCCATCTCAAGCAATCCAGCAGCTAGGCACAGAATTGCTATCTCATCTTCTTGCACAGGAACATTTTCAGCAGGATATTACAACAAAAAATGCAGTTGTACCACTTGTTCAGCTTGCAGGAATTGGAATATTGAACTTACAGCAGACAGCAATCAAGGCATTGGAGAACATCTCTATAAGCTGGCCAAAGGCAGTTGCAGATGCTGGGGGCATTTTTGAGCTTGCAAAAGTTATCATTCAAGATGACCCGCAACCACCTCATGCTTTGTGGGAATCAGCTGCACTGGTTCTCTCTAATGTTCTGCGTTTCAATGCTGAGTACTATTTCAAAGTTCCTCTTGTTGTTCTCGTGAAAATGCTGCATTCAACACTGGAGAGCACTATTACGGTGGCTCTTAATGCCCTGATTGTTCATGAAAGGAGTGATTCGTCAAATGCTGAACAGATGACTGAAGCTGGTGCCATTGATGCTTTGCTGGACCTTCTGAGATCTCATCAGTGTGAAGAGCCTGCTGGAAGATTACTTGAGGCTTTATTTAACAATGTGAGAGTACGAGAGATGAAAGTCTCCAAGTATGCAATAGCACCTTTATCACAGTATCTGTTAGATCCACAAACCAGATCACAATCTGGTAGGCTTCTTGCAGCTCTTGCTCTTGGTGACCTCTCCCAGCATGAAGGACTTGCTAGAGCCAGTGATTCTGTATCAGCATGCCGTGCACTGATAAGCTTGCTTGAAGATCAACCAACAGAAGAAATGAAAATGGTGGCAATTTGTGCATTGCAGAACTTTGTGATGCGCAGTAGAACTAATAGGCGAGCTGTTGCTGAAGCAGGTGGCATATTGGTAGTTCAGGAACTACTACTTTCTCCTAATTCAGATGTTGCTGCGCAGGCAGCATTGCTGATCAAATTTTTATTTTCCAATCACACGCTTCAAGAATATGTGTCAAATGAGCTCATCAGATCATTGACAGCTGCATTAGAGAAGGAGTTGTGGTCCACAGCAACCATCAATGAAGAGGTCCTGAGAACCATAAATGTGATATTTGCCAATTTTCATAAGCTCCATATTTCTGAAGCAGCTACCCTGTGCATTCCCCATTTGGTAGGAGCGCTCAAGTCTGGAAGTGATGCTGCTCAGGAATCTGTCTTGGACACCTTATGCTTGTTAAAACATTCATGGTCAACCATGCCAATAGATATTGCCAAATCTCAAGCCATGATTGCAGCTGAAGCCATTCCCATTCTGCAAATGCTTATGAAAACCTGTCCACCAAGCTTCCACGATAAAGCAGATAGCCTCTTGCATTGTTTACCAGGGTGTTTGACTGTTACCATTAAGCGTGGGAACAACCTAAAGCAGGCCATGGGGGGAACAAATGCTTTCTGCCGATTGACAATAGGCAATGGTCCTCCACGGCAAACCAAGGTAGTGAGCCACAGTACATCCCCAGAATGGAAAGAAGGATTTACATGGGCATTTGATGTACCACCGAAGGGACAAAAGCTCCACATTCTATGTAAAAGCAAAAGTACTTTTGGAAAGACAAATCTTGGGAGAGTGACCATCCAAATCGACAAAGTTGTCACGGAAGGTGTATACAGCGGATTGTTCAGCCTGAACCATGACAGCAACAAAGATGGGTCTTCCCGAACACTAGAAATCGAGATTATCTGGTCCAACAGGATATCAAATGAGAGCATGTGA 6081 44.1 MRMSKSPSPEPQEPISSSPSRPRESNGISGMDDPESTMSRVAHFVEQLHANMSSPHEKELITARLLGIARARKDARTLIGTHVQAMPLFISVLRSGTPVAKVNVAATLSVLCKDEDLRLKNKQDKVVEGFVTGALRNLCGDKNGYWKATLEAGGVDIIVGLLYSDNAAAQSNAASLLARLMLAFSDSIPKVIDSGAVKALLRLLGQENDISVRASAADALEALSSKSTRAKKAVVDADGVPVLIGAIVAPSKECMQGECGQALQGHATRALANICGGMSALIMYLGELSQSPRLAAPVADIIGALAYSLMVFEQQSGVEEEPFDVTQIEDILVMLLKPRDNKLVQERVLEALASLYSNKYLSRWINHAEAKKVLIALITMAAADAQEYLILALTSLCCDGVGLWEAIGMREGIQLLISLLGLSSEQHQEYAVQLLAILTDQVDDSKWAITAAGGIPPLVQLLEIGSQKAREDAAHVLWNLCCHSEDIRACVESAGAVPAFLWLLKSGGLKGQEASAMALGKLVRTADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASHEDLVHKGSAANKGLTSLVQVLNSSNEETQEYAASVLADLFSTRQDICDSLATDEIVHPCMKLLTSKTQVIATQSARALGALSRPTKAKATNKMSYIAEGDVKPLIKLAKTSSIDAAETAHFPVGDVLTGNAQCRFAVLALVDSLNSMDLDGTDAADALEVVALLARMKQSVNFTYSPWSALAEVPSSLESLVRCLAEGPPLVQDKAIEILSRLCGDQPVVLGDLLVAQSRSIGSLANRIMNSSSLEVRVGGTALLICAAKEHKQAAMDALDVSGYLRPLIYALVDMMKQNSSCSSLEIEVRTPRGFMERTAFQEGIEFEVPDPATVLGGTVALWLISIICSFHAKSKITVMEAGGLEALSEKLTSYASNPQAEFEDTEGIWISALLLAILFQDANVVLAPATMRIIPSLALLMKSDEVIDRFFAAQAMASLVCNGSRGINLTIANSGAVAGLITLIGYIELDMPNLVALSEEFCLVRKPDQVVLENLFEIEDIRVGSTARKSIPLLVDLLRPIPDRPGAPPIAVQLLTRIADGSDTNKLIMAEAGALDALTKYLSLSPQDSSEASVSELLRILFSNPDLLRYEASISSLNQLIAVLRLGSRNARFSAARALHELFDAENIRDSELARQAVQPLVDMLNAASESEQQAALVALIKLTMGNSSKASLMTDVEGNPLESLYKILSSSTSSLELKGNAAQLCFVLFNIPKIRALPMASECIEPLILLMQSESSTAVESSVCAFERLLDDEQLVELAAAYDIVDLIVSLVSGSNHQLIETSICALTKLGKDRTPLKLDMVKAGIIDNCLELLPVAPSSLCSSIAELFRILTNSSAISKGSAAARIVEPLFMVLLRPDFSMWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALENISISWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRFNAEYYFKVPLVVLVKMLHSTLESTITVALNALIVHERSDSSNAEQMTEAGAIDALLDLLRSHQCEEPAGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGRLLAALALGDLSQHEGLARASDSVSACRALISLLEDQPTEEMKMVAICALQNFVMRSRTNRRAVAEAGGILVVQELLLSPNSDVAAQAALLIKFLFSNHTLQEYVSNELIRSLTAALEKELWSTATINEEVLRTINVIFANFHKLHISEAATLCIPHLVGALKSGSDAAQESVLDTLCLLKHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDKADSLLHCLPGCLTVTIKRGNNLKQAMGGTNAFCRLTIGNGPPRQTKVVSHSTSPEWKEGFTWAFDVPPKGQKLHILCKSKSTFGKTNLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEIIWSNRISNESM* 2027
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 2662827 2675878 + Vvi18g243 Vvi18g243 779946

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g243 2026 MobiDBLite consensus disorder prediction 1 35 - -
Vvi18g243 2026 CDD C2 1900 1990 - -
Vvi18g243 2026 Gene3D - 318 569 IPR011989 -
Vvi18g243 2026 Gene3D - 892 1222 IPR011989 -
Vvi18g243 2026 Gene3D - 80 317 IPR011989 -
Vvi18g243 2026 Gene3D C2 domain 1898 2025 IPR035892 -
Vvi18g243 2026 Gene3D - 1480 1688 IPR011989 -
Vvi18g243 2026 Gene3D - 1231 1479 IPR011989 -
Vvi18g243 2026 SMART C2_3c 1899 1995 IPR000008 -
Vvi18g243 2026 MobiDBLite consensus disorder prediction 1 33 - -
Vvi18g243 2026 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1897 2003 IPR035892 -
Vvi18g243 2026 Gene3D - 1689 1894 IPR011989 -
Vvi18g243 2026 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 682 2025 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vvi18g243 2026 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 14 120 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vvi18g243 2026 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 120 681 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vvi18g243 2026 Gene3D - 570 863 IPR011989 -
Vvi18g243 2026 ProSiteProfiles C2 domain profile. 1879 1996 IPR000008 -
Vvi18g243 2026 SMART arm_5 1599 1637 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1434 1475 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 142 182 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1096 1136 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1811 1850 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1476 1516 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 605 645 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1725 1765 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1178 1219 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1306 1347 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 562 603 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 398 440 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 227 276 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 184 225 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 1349 1389 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 442 482 IPR000225 GO:0005515
Vvi18g243 2026 SMART arm_5 484 524 IPR000225 GO:0005515
Vvi18g243 2026 PANTHER - 120 681 - -
Vvi18g243 2026 PANTHER - 682 2025 - -
Vvi18g243 2026 PANTHER - 14 120 - -
Vvi18g243 2026 SUPERFAMILY ARM repeat 1083 1435 IPR016024 -
Vvi18g243 2026 SUPERFAMILY ARM repeat 85 530 IPR016024 -
Vvi18g243 2026 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 239 IPR000225 GO:0005515
Vvi18g243 2026 SUPERFAMILY ARM repeat 326 996 IPR016024 -
Vvi18g243 2026 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 453 495 IPR000225 GO:0005515
Vvi18g243 2026 Pfam Armadillo/beta-catenin-like repeat 446 481 IPR000225 GO:0005515
Vvi18g243 2026 Pfam C2 domain 1899 1998 IPR000008 -
Vvi18g243 2026 SUPERFAMILY ARM repeat 1448 1810 IPR016024 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g243 - - - vvi:100260874 3563.85
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g243 . . . . Bpe02g00638 . . Bma01g02075 . . Cma01g01381 Cma09g00780 . . . Cpe06g00615 . . . . . . . . . . . . . . . . . . . Lsi04g02405 Csa04g01786 . . . . . . . . . . Sed05g2372 Cmo01g01431 Cmo09g00772 . . . Car09g00689 . Cpe02g00558 Bhi09g02699 Tan01g4048 Cmetu09g1153 . . Mch11g0844 . Cla11g01545 Cam11g1609 Cec11g1637 Cco11g1639 Clacu11g1767 Cmu11g1583 Cre11g2000 . . Chy07g00624 Cme07g00829
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010101 0 2 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 31