Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g244 ATGGCGGAGGCAGTCACAGTAATGGACATCGACGAGGAAGACAACCATTTGCTGAAAGCAAACAAGGGCAAGTCTGTCGTTGTCGGAGGTCCGCCGGATCGCAAAGCAACTCCGTGGGTAGAGAAGTACCGGCCACAGTCCCTTGCCGACGTTGCCGCTCATCGCGACATTGTCGATACCATCGATAGGCTCACGAGTGAGAATAGATTGCCCCATCTACTACTGTATGGACCTCCCGGTACGGGTAAAACCTCAACTATTCTCGCAGTCGCTCGCAAGCTGTACGGAGAACAGTTCCATAATATGATTCTCGAGTTGAATGCTTCCGATGATCGTGGGATAGATGTGGTGCGGCAGCAGATCCAAGATTTTGCTAGCACTCAGAGCTTCTCCTTTGGTGCAAAGTCGTCCGTGAAGTTGGTTCTATTGGATGAGGCAGATGCGATGACAAAGGATGCACAGTTTGCCTTGCGCCGGGTGATTGAGAAGTACACAAAGAACACTAGGTTTGCACTAATTTGTAATCACGTCAACAAGATTATTCCAGCGCTACAGTCAAGGTGTACTCGATTTCGGTTTGCCCCTCTTGATGCAGTTCATGTTACTGAGCGACTTAAACATGTTATAAATGCTGAAAAACTTGATGTATCTGAGAGTGGCTTAGCAGCACTTGTACGGCTGAGCAGTGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACACATATGGCTTCTCAGCAGATAACGGAGGAAGCTGTCTATCTGTGCACTGGAAATCCATTGCCTAAAGACATTGAGCAAATTTCTTACTGGCTGCTGAATGAATCATTTGCAGCTAGTTTTGATCGAATATCTGAAGTCAAGATGAGGAAAGGATTAGCCTTAGTAGATGTTGTAAGGGAGGTGACAATGTTTGTTTTCAAGATCAAAATGCCATCAGATGTTCGAGTTCAATTAATCAATGATTTAGCTGACATTGAGTACAGGTTGAGTTTTGGTTGCAATGATAAGTTGCAGCTTGGATCACTTATTGCTTCATTTACACGTGCTCGAGCAGCGTTGGTTGCTGCTGCAAAGTAG 1083 45.71 MAEAVTVMDIDEEDNHLLKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFTRARAALVAAAK* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2677066 2684336 - Vvi18g244 Vvi18g244 779947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g244 360 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 356 - -
Vvi18g244 360 Gene3D - 199 260 - -
Vvi18g244 360 CDD HLD_clamp_RFC 196 258 - -
Vvi18g244 360 CDD AAA 57 195 - -
Vvi18g244 360 Pfam ATPase family associated with various cellular activities (AAA) 73 193 IPR003959 GO:0005524|GO:0016887
Vvi18g244 360 SUPERFAMILY post-AAA+ oligomerization domain-like 261 351 IPR008921 GO:0003677|GO:0006260
Vvi18g244 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 254 IPR027417 -
Vvi18g244 360 Gene3D - 261 358 - -
Vvi18g244 360 Pfam Replication factor C C-terminal domain 261 347 IPR013748 -
Vvi18g244 360 PANTHER REPLICATION FACTOR C SUBUNIT 5 34 356 - -
Vvi18g244 360 SMART AAA_5 69 199 IPR003593 -
Vvi18g244 360 Gene3D - 32 195 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g244 K10756 - vvi:100266082 682.174