Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g247 ATGGGAGTTACTCCAATTAAATTAAATTTCTGTATATTTTTTGTTAATATTATTATTATTATAAAATATAAGATTTTGTTGGTTTGTTTAATTTTTCAAAGAGAGGGAAAGAGACTGCTTATCGATCTCATCGTCGTCTTCCCCAGAAGCTCTATATCGAAGAGTTGTTGCGGGAGGAAGTCGTCAATGGCGGAAGATAGTGAGACGAAGAAGGTGTTCGACGCTGAAGCAGCGGCTTCGCTAATGAAGGAGCTGAGAGGAACCTACGCTTCTGGAAAAACAAGGAGCTATGAGTGGAGAGTGGCGCAGTTGAAGAATCTGATGAAGATCGTCGATGATCACGAGAAAGATATCCTCGACGCTATTCGTGCTGACCTTTCCAAGCCCGAGCAAGAATCCTACATCGCCGAGATTTCTATAATAAAGTCATCCTGTACGCGTGCACTTGGGGAATTAAATCGATGGATGAAACCAGAAAAGGTTAAAACTTCAATAACAACTTTTCCTTCATCAGCAGAAATAGTGTCAGAACCATTGGGTGTAGTATTGATCATTGGAGCATGGAATTTTCCTTTGTTGTTAGCTCTTGATCCAGCCATTGGAGCTATTGCAGCTGGTAATGCTGTGGTTTTGAAACCATCAGAACTTTGTCCTGCCACTTCCTCATTGATTGCCAAACTTGTTGGGAAATATTTGGATAGCTCTTGCATAAAAGTTGTTGAGGGGGCTGTGGCTGAAACATCTGCATTACTGGAGCAAAAGTGGGACAAAATATTCTTTACAGGTAGTGGAAGAGTGGGACGAATTGTGATGGCAGCTGCTGCAAAGCACCTTACACCTGTAGCTTTGGAGCTTGGGGGGAAATGTCCAGTTGTCGTTGATTCAGACATTAATTTACCTGTTGCAATTAGGCGGATAGCAGGGGGCAAGTGGGCAAGCAATAATGGACAAGCCTGCATTGCTCCTGATTATATTGTCACAACAAAAGACTTTGCTCCAAAGTTGATAGATGCTCTGAAACATGAATTGGAGGCGTGGTATGGAAAGGATCCATTGGAATCAAAAGACTTGGCCCACATTGTGAATTCTAATCACTTTGCTCGCTTGGCGAAGCTCTTGGATGATGATAAGGTTTCGGGTAAGATTATCCATGGAGGTCAAAGGGACAAAGCCAACCTGAAGTTTGCTCCCACCATCTTGCTGGATGTCCCAGAAGACTCTCTGGTCATGAATGAGGAGATATTCGGTCCTTTACTTCCCATTCTCACGGTTGACAAATTGGAAGACAGCTTTGACATGATAACCTCAAGAGGGAAGCCACTTGCAGCATATCTATTTACCAACAACAAGAAGCTCAAGGAGAAGTTTGTGAAAACAGTCTCTGCAGGGGGTTTGGTCATCAATGACACTGTTTTACATTTTGCAGAGAAGACTCTCCCTTTTGGAGGAGTTGGAGAGAGTGGAATGGGTTCATACCATGGGAAGTTCTCTTATGAGGCTTTCAGCCATAGAAAGTCAGTTCTTTACAGAGGTTTTGCTGGGGATGCATCTGCAAGGTATCCCCCATACTCGGATCGGAAGCTAAAGTTACTCAAGGCTCTACTCAGTGGGAGTGTCGTTGGTGTAATCCTTGCTCTGATTGGATGGTCTTAG 1653 43.32 MGVTPIKLNFCIFFVNIIIIIKYKILLVCLIFQREGKRLLIDLIVVFPRSSISKSCCGRKSSMAEDSETKKVFDAEAAASLMKELRGTYASGKTRSYEWRVAQLKNLMKIVDDHEKDILDAIRADLSKPEQESYIAEISIIKSSCTRALGELNRWMKPEKVKTSITTFPSSAEIVSEPLGVVLIIGAWNFPLLLALDPAIGAIAAGNAVVLKPSELCPATSSLIAKLVGKYLDSSCIKVVEGAVAETSALLEQKWDKIFFTGSGRVGRIVMAAAAKHLTPVALELGGKCPVVVDSDINLPVAIRRIAGGKWASNNGQACIAPDYIVTTKDFAPKLIDALKHELEAWYGKDPLESKDLAHIVNSNHFARLAKLLDDDKVSGKIIHGGQRDKANLKFAPTILLDVPEDSLVMNEEIFGPLLPILTVDKLEDSFDMITSRGKPLAAYLFTNNKKLKEKFVKTVSAGGLVINDTVLHFAEKTLPFGGVGESGMGSYHGKFSYEAFSHRKSVLYRGFAGDASARYPPYSDRKLKLLKALLSGSVVGVILALIGWS* 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2745338 2754460 - Vvi18g247 Vvi18g247 779950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g247 550 PIRSF ALDH 60 546 IPR012394 GO:0006081
Vvi18g247 550 SUPERFAMILY ALDH-like 83 512 IPR016161 GO:0016491
Vvi18g247 550 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 312 323 IPR016160 GO:0016491
Vvi18g247 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 287 487 IPR016163 GO:0016620
Vvi18g247 550 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 3 MEMBER I1, CHLOROPLASTIC 49 550 - -
Vvi18g247 550 Pfam Aldehyde dehydrogenase family 85 507 IPR015590 GO:0016491
Vvi18g247 550 PANTHER ALDEHYDE DEHYDROGENASE 49 550 IPR012394 GO:0006081
Vvi18g247 550 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 87 505 IPR016162 GO:0016491
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g1259 Vvi18g247 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g247 K00128 - vvi:100248915 924.465