Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g249 ATGGGCTGCGGAGGCTCCAAGGTTGATGATTATCCGTTGGTAACTCTTTGCAGAGAGCGTAAGGAGTTGATCAGGGCCGCCGCGGAGCACCGTTACGCTCTCGCTTCCGCTCACATTTCTTACTTCCGATCCTTGAAGGATGTTGGTGATGCTCTTCGCCGATTCGTCGACGAAGAGCTCGTGATTGGTGCCACTTCGCCGTTGGATTCGCCGGTTCTCACGTTGCCCTCACAGGAAGGAAAAAGGAAAAACAGGAATAAGAGTGGTGAGAATAGTGGTAATAATAAAGGTTCGTCTTCGTCAACTTCGATTCCACATACAGTTTCGCCTCATACGCCGGAAGAGGACGCAGGGGAAGGGTCTCACTTGCATTTATCATCTGGGTCGGAATCTGAATTGGGTTCTTCATCTGGTCACATTCATATCGAGGACTCTCCAGAATTGGAGAGGCGGTATAATTCGTCTCCTCCAATGGGTTGGAGCCCACCTGGAATGAATTCATATTCATATTACATGAAGTCCTCTCCTGCCCCACCAAATGTGGTGTACGAGGAGGTGCAAAGATCTCCAACGGAGAATGAGCAATGGGGGAACTCTGGTTACGCTTATCCAGGCTATCCATACGCGAATGGAGGGTACTATGGGGATCCTCATTATAATTCACAACCGAGTCCTCGAGCTGCTCCACCATCCCCTCCTTCACCCAAGGTCTCTGCCTGGGACTTTTTGAATCCATTTGATTCATATGATAGTGTTTACCCAAGTTATTATTCACAGAGTAGATACGGATCAGCTGCAGGTAGTAGTCCTGATTCGAAGGAAGTGAGGGAGAGAGAGGGAATTCCCGATTTGGAAGATGAAACAGAGCAAGAAGTGACGAAAGCGGTTCACCAAAAAGAAAAGAAATTGAATGATTATGTAAATAGAAATTCAGGCGAGGGTACTTCAAGGGCAGTACCAGTGAAGCGTGGTGAAGACAATTCATGGACGGTGCCATCAAAAAAGAGTGAGAACACGCAATCAGCCCAAGGAAGAGAAGGAAAAGAGATAAAGAGCAGCCCTGATACCATTGTATCGAAGAGCTCTGAAGAGGGGTCGACAAAGAAAAAATCTGTCAGTTTTGAAGAGGCATCAGTGCATGATATTGAATCCTCCAAACAGAGTAGCATGACCACATTGTCTGCCCATGGCACACGAGACCTTCAGGAGGTTGTCAAGGAAATCAGGGATGAATTTGAGACAGCATCTGGTTATGGGAAAGAGGTTTCAATGTTGCTCGAGGTGGGCAAGTTGCCTTATCAGCCTAGAGGCACTGTATTTAAAGTGATCTTGTCCAGGATCTTGTATCTTATAGCCCCTTCAACCTCATCTTCACACTTTCCATCCAGTCAGTCTGTACAAATGGCTTACAGCACACTGAAAATGGCAAAAGCCTACTATGGGGATTCCTGGAAGGATATCTATACGAAGCCAAACAAACTTTCATCAACTTTGGACAAGTTGTATGCATGGGAGAAGAAACTATATAAGGAAGTTAAGGATGAGGAAAGGCTTCGGATTATCTATGAAAAGAAGTGCAGGAGGCTTAGAGCTTTGGATAACGGAGGAGCTGAGTCCAGTAAAATTGATGCTGCCCAGGCTTCAATAAGAAAGTTGCTGACAAAAATTAATGTTTGTATCAGAGCTGTTGATGCGATCTCAGGCAGGATACACAAGTTGAGGGATGAAGAGTTGCAGCCCCTACTCACCGAATTGATTCATGGATTGATCAGAATGTGGAAGTCCATGCTCAAGTGTCATCAGAAGCAGTTCCAAGCCATATTAGAGAGTAAAACTCGCACTCTGAAAGCACGAACAGGCTTTAGAAGAGATTTGATCTTGAGAGCAACTGTAGAACTCGAAATGGAGCTCCTGAATTGGTGCACCCGTTTTAACAATTGGGTTAACATCCAAAAGAGCTATGTTGAGTCCTTGAATGGGTGGCTATTGAGATGCCTTCTTCATGTACCTGAAGAAACGGATGATGGAATTGTCCCCTTCTCTCCAGGCCGGATTGGAGCTCCAGCAATCTTCGTAATGTGTCATGATTGGTACCAATCCATGGAAAGAATTTCAGAAGCTGCAGTAGCAGATGCCTTGCAAGATTTCGCAATGAAATTGCACCAGTTATGGGACAGGCAAGACGGGGAGCAAATGAAGAGAATTGACCATGAGCAAGATGCATTGTCAGAGAAAACAGCGGTCTCAATTGTTGCCTCTGAAAGCGGAATTTCACCACTGGATGATCTGAGGGTGGATTTGGATTCAATGAGAAAGAGAATAGCTGAAGAGAGAACCGGGCATAAGGGGGCCATTAAACTGGTGCCCGCCGCAGCCTCTGCCAGTTTGCAAGCAGGTCTGATCCCTATTTTTGAGGCTTTGGAGAATTTCACTTCAGAGGCACTGAAAGCTCATGAGCAAGTGAGGCTTCAAAACACCGGGGAGGCTCAGGGAAACTAA 2499 46.06 MGCGGSKVDDYPLVTLCRERKELIRAAAEHRYALASAHISYFRSLKDVGDALRRFVDEELVIGATSPLDSPVLTLPSQEGKRKNRNKSGENSGNNKGSSSSTSIPHTVSPHTPEEDAGEGSHLHLSSGSESELGSSSGHIHIEDSPELERRYNSSPPMGWSPPGMNSYSYYMKSSPAPPNVVYEEVQRSPTENEQWGNSGYAYPGYPYANGGYYGDPHYNSQPSPRAAPPSPPSPKVSAWDFLNPFDSYDSVYPSYYSQSRYGSAAGSSPDSKEVREREGIPDLEDETEQEVTKAVHQKEKKLNDYVNRNSGEGTSRAVPVKRGEDNSWTVPSKKSENTQSAQGREGKEIKSSPDTIVSKSSEEGSTKKKSVSFEEASVHDIESSKQSSMTTLSAHGTRDLQEVVKEIRDEFETASGYGKEVSMLLEVGKLPYQPRGTVFKVILSRILYLIAPSTSSSHFPSSQSVQMAYSTLKMAKAYYGDSWKDIYTKPNKLSSTLDKLYAWEKKLYKEVKDEERLRIIYEKKCRRLRALDNGGAESSKIDAAQASIRKLLTKINVCIRAVDAISGRIHKLRDEELQPLLTELIHGLIRMWKSMLKCHQKQFQAILESKTRTLKARTGFRRDLILRATVELEMELLNWCTRFNNWVNIQKSYVESLNGWLLRCLLHVPEETDDGIVPFSPGRIGAPAIFVMCHDWYQSMERISEAAVADALQDFAMKLHQLWDRQDGEQMKRIDHEQDALSEKTAVSIVASESGISPLDDLRVDLDSMRKRIAEERTGHKGAIKLVPAAASASLQAGLIPIFEALENFTSEALKAHEQVRLQNTGEAQGN* 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2777879 2785078 + Vvi18g249 Vvi18g249 779952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g249 832 MobiDBLite consensus disorder prediction 362 382 - -
Vvi18g249 832 MobiDBLite consensus disorder prediction 259 397 - -
Vvi18g249 832 MobiDBLite consensus disorder prediction 212 241 - -
Vvi18g249 832 Pfam Protein of unknown function (DUF632) 401 721 IPR006867 -
Vvi18g249 832 MobiDBLite consensus disorder prediction 67 156 - -
Vvi18g249 832 MobiDBLite consensus disorder prediction 383 397 - -
Vvi18g249 832 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Vvi18g249 832 MobiDBLite consensus disorder prediction 124 138 - -
Vvi18g249 832 MobiDBLite consensus disorder prediction 90 109 - -
Vvi18g249 832 PANTHER FAMILY PROTEIN, PUTATIVE (DUF630 AND DUF632)-RELATED 1 826 - -
Vvi18g249 832 PANTHER UNCHARACTERIZED 1 826 - -
Vvi18g249 832 MobiDBLite consensus disorder prediction 271 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g249 - - - vvi:100254101 1511.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g119 Vvi18g249 ECH
Vvi7g1287 Vvi18g249 ECH
Vvi7g1262 Vvi18g249 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g249 . Blo12g01126 . . . Bpe04g00008 . . . . Cma01g01385 Cma09g00786 . . . Cpe06g00620 . . . . . . . . . . . . . . . Cone4ag1415 Cone7ag1523 Cone17ag1288 . Lsi04g02398 Csa04g01790 . . . . . . . . . . . Cmo01g01435 Cmo09g00777 . . . . . . Bhi09g02691 Tan01g4039 . . Hepe01g2294 . . . . . . . . . . . Chy07g00629 Cme07g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35