Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g25 ATGGTGAAAAGTGTATTTGAGTTCAAATCAAACAGCGAGAGAGAAGAGAGAGAAGGTCGTCTTCCCCCTCCGCCAGTTGTTTCTCTCTTCTGTGACTCTGCATTTCACTGTCGAACCCTAATTTTCCTATTCGGATCCTCGATCCGTACTCGGTGTCTCTTTTATTTTCGACAATGGAGGTTCTGGTTGGCTGATCTCGCCCTCGATCTGCTGATCCAGGGGCTGCATTTACCGTTGTTTGGTCTCGAGATCCCTGTTCTGCGTTCGGAGTGCTGCAGCGCAGTGGAATCTGAGACGGAGGTTTCGGAGGTTTTCAAGGGTGAAATTGTGGAGGCGTGTGATTTGGATATGAGTTCGTACGAGGATCTACCCAAAGGCGGTGGGGAATGTAATGGGGTTTCGCATGAGGGTGGAGAAGGCGTTGTCGGAAATGGAAAGGGTGATTCCGAATGTTCTTATGTGTTTGTTAGCGGGAGCGACGTGGTCTCTGATGACTACGCTGAAAAGGAACTCTATGTGGAGTCTCTTCGGGAACTCGACCAACCCAAGGATGAGAAAGAGGTCCAAGTTGGGGAATTGAGTATTCAGAATGAGGAAAATCAATTGCACGAGGCAGATTGTTGCGTTGTTGAGGGAACTGTTGTTTCCTCTTCAAACGACGGTGTGCAGGTTGAATCAACCGGTGGACTGGTCCCGGAGGGTGATTTGCTTCAGGAGCCCAATGCGGAAGTGGACGTGGAATCTGAACCACAGAAGCTTAATGGTGTAGTGAAGATGGAGGAGCAAACTAGTTTGGAGTCTGATACAGAGCAAACTAGTTTGGAGTCCGGTGTGGAGCAAACTAGTTTGGAGTCCGGTGCGGAGCAAACTAGTTTGGAATCTGGTGCGGAGCAAACTAGTTTGGAATCGGGTGCGGAGCAAACTAGTTTGGAGTCTGGTGCGGAGCAAACTAGTTTGGAATCTGGTGCGGAGCAAACTAGTTTGGAATCGGGTGCGGAGCAAACTAGTTTGGAGTCTGGTGCGGAGCAAACTAGTTTGGAGTCTGGTGCCGAGAAAACTATTCTGGAGTCTGGTTCAGAGAAAACTATTCTGGAGTCTGGTTCAGAGAAAACTATTCTGGAGTCTGGTTCAGAGAAAACTGATCCAGAGTCTACTAAGATAGCACTGGAGAAACCACAATCTCAAATTGTGGTTCCAGTCGCTGTTGGATGTGAATTGATGCATTTAGATAATGGGAATCCAACAGTTGATGGACATATCAATTTCAAGCCTTCTGAGGAGATAGCTGGAAGTCAGGAATTTCTAGTTCCAATTTTGGAGACCACTGAATTCAAATTGCCTCTAACTGAGCTTAGAGAAGAGAAGGATGAGGGGCAAAATAATTTAGAATCAATACCAGAAGTCACAGACAATCAGGGATTTGAAGTTGTGATTTCAAACTCAGATGAATGTGACCTGCATCAGCTCAATAACGTACAGGAGAAAGTTCAGGATGAAAGTGAGACTGTTCCAGAAACAGTCTCAAATGAAAATCAAGAATCTGAAATTAAGGTTTCTGAAGACCTTCCATTTGATAAGGATCAGGAAAAGCAAACATCAGAATTGGAGAATGACCTTCCTTCTGAACATCCTCCAGTGGACCTTGGGGTGAACTTGGAGCTGAATTTGAAAATGCCTACTGCTGAAACCAATATGCAAAAGGAGGCAGAAGTTGCTGTTGGGTCTGTACCAGATGAAAATGGAGATGGATCGCCTATGGAATGTAGTCCTTCAGAAACAGAAGTTGCTAATGATTCGGTTGATGGCAATCAAACCACACCTGAGCTTTATGTATCTTCTGAAAATGACAAAAGCTTGTCTTCCTACAGTGACTGTGTGAGATCAGAAAGCACAGTTGGGTATGTACCTGTTGAAAATGCTGTAAGCTTGCCTACTGGTCTTGATAATGGTCCAGTAGTAGAACAAGAAGAAAATGGGGCTTCTCTAATTACTGAAGATTTCCCAACTTGTGCTGCAGATGGTGCAAGACAGGACACTAAAGTTGAAATTTTTGACCCAATCAACGGTGCAAATGTTGTCTCCTGTCCAGATGATGGTACAAAGTCAGAAAGTGAAGCTGAGAATGGCCCTAATGAAGATGATACAAGGTTAGCTTGCTCTGGTAATGATGTGAGACCTGAAACTATCATCAGTTTTGGTTCTATTAAATTCCCATGTGGTGATGGAAATGTAGAACACCATGCTTCAAAAGCGGCCCCTAAATGTTCAAGCTGTGAGCCTGGTGATGTTGATGATCTGGTGCTTATGGCATCTGATTTGAAGGATTCAGTTGAAAATCGAAGTAACTTGCCTACAAATGCCGTTGCTGAGATGAAATCAGAATCTGAAGTTGAAAAAATGTCTGCTGGAAGCAACAAAGACCTTGTATCTGAACCCAAGGTTCTGAATGACTCTGTTGTTAACAGTGAAAGTGTAATAAACAGTGTTGCACATGCTGTGGATGTTAAAATTGAAGGAGATCAAATCAGTACCAAAGACATTGATGTTGGAAATGAGGGAGATCAAATTACTTCTGTAGACAGTGATGATAAATTGACATGTCAAGAAGCTAGGAGTGTTTTAGGTAATGGAACCTCTTCTTCTCTAGAGTTTTTGAGTACTGATGCTTTGGATTCACAGAATGTACCTGTTGAGGTTGGAAAAAGGCCATTCTACTTCTTGATTAGGGTACCAAGGTATGATGATGAAAAAGTCAGGGAAGAGATCAAACTTGCACAGCTACAAGTTGATGAGAAGACCAAAAGTAGGGATGCAATTCGTTCGGAAATTCAAATAAAAAGGGCAGTTTGTAAAGAGTATAGTGAAAAATTTGAAGCTGCACTATCAGAAGAGAGAGCTGCCCGAGATTTGCTCAAGTCAAAATTTCAGGAAATGGATTCAGTTCAGTCTGTGATTAACAGAGTGAAAAATGCAATGTCTGTCAAGGATATTGATGGCAGGATACGCCACATGGAACATGCCATAGAACATGAAACCCTTCCTTTGAAAGAAGAGAAGCAGTTAATTCGTGACATCAAGCAGTTGAGGAATGTTCGTGAACAGCTGTCCTCTAATATGGGTAGGCAGGAGGAAGTCCAACAGGCCTTAGACCAAAAATCCCAAGTCGAGGAGCAGTCAAAGATTTTGAGGGAGGAAGTGGATTCACTCAAATACAAGGTTCAGAAAGCTGAAGTGATCACAAAAGCTGCTAAGAAGAAGTATTATGATGAAAATGAAAAGTTGAATGAGTTGCAAGCTCGATTTAAAGCCGCAGATGATATTCGTCAAGAAGCATACACACATTTGCAGAGTTTGAGGAAAAAATTGTCCGAGAAGAACAAATACTTTAGGATGTACAAGGATAATTTGAAAGCAGCCAATGATTATGCATCAGCTGGGGATAAAGAGGCACTTCAACGGCTTTGTGTTAATGAGGTGGAGACAATTATGGAACTATGGAACAACAATGACGAGTTCCGGAAAGAATACGTCAGATGCAACACAAGGAGTACACTCAGGAGACTGAGGACTTTGGATGGACGCTCTCTTGGCCCTGACGAGGAGCCGCCTGTGATACCCAATTTTTTAAATGAAAGAATTGGCAGGTCACTTTTTGCCCCGACCAAGGATAGCTCTGTGCTAATAGTCTCGACTGTGGAACGAGAAAAACAAATGGTACCTGCTACAGCTGAGAGTGCAGATGATAAATCCGTGGTGAATGTGACCAATCAAAAGAATCGGACAGCAAAAAATAAAAACCCCACTAAATCTGCTACTGGAGCTGTCTCAGCAACCATTTCTGGAAGGGATGAGATCGAAGAGACTAAAGAAGAGCATAAGCAGACAAAGGAGGAAGAGGAATTGGCCAGGAAGGCAGAGGAATTGAGAAAGGAAGAGGAAGCAGCTAAGTTGAAGGAGCAACGACGGTTGGAGGAGAAAGCCAAAGCTAAGGAGGCACTGGAAAGGAAAAAACGAAATGCAGAAAAGGCCCAAGCCAGAGCTGAGTTAAGAGCGCAGAAGGAAGCCGAACAGAAACAGAGAGAAAGGGAGAAGAAGGCCCGGAAAAAAGAAAGAAGGAAATCATCCTCTGCAGAGGGTACTGAGGGTTGCAATGAAGCAGAATCTGCGCCAAGCTCAGAAACCTCATTTGAAACTACCCTGGATTCTGAAATCATTGAGAAGCCTAGGGCAATAACAAAGAAGCCTCACAAATCATCACAATTTACAAAGCAACCCAAGTCAAAATCCATACCTCCACCCCTTCGCAGCAGGGGCAAGAGACGGATTCAGTCATGGATGTGGGTCGTTCTAATAGCCCTGCTTGTTCTTGCATTGTTCTTGTTGGGCAACAGTGGCTTCTCTTACGGCCTTGGGCTGCGAAACTTTGGCTTCTAA 4434 43.78 MVKSVFEFKSNSEREEREGRLPPPPVVSLFCDSAFHCRTLIFLFGSSIRTRCLFYFRQWRFWLADLALDLLIQGLHLPLFGLEIPVLRSECCSAVESETEVSEVFKGEIVEACDLDMSSYEDLPKGGGECNGVSHEGGEGVVGNGKGDSECSYVFVSGSDVVSDDYAEKELYVESLRELDQPKDEKEVQVGELSIQNEENQLHEADCCVVEGTVVSSSNDGVQVESTGGLVPEGDLLQEPNAEVDVESEPQKLNGVVKMEEQTSLESDTEQTSLESGVEQTSLESGAEQTSLESGAEQTSLESGAEQTSLESGAEQTSLESGAEQTSLESGAEQTSLESGAEQTSLESGAEKTILESGSEKTILESGSEKTILESGSEKTDPESTKIALEKPQSQIVVPVAVGCELMHLDNGNPTVDGHINFKPSEEIAGSQEFLVPILETTEFKLPLTELREEKDEGQNNLESIPEVTDNQGFEVVISNSDECDLHQLNNVQEKVQDESETVPETVSNENQESEIKVSEDLPFDKDQEKQTSELENDLPSEHPPVDLGVNLELNLKMPTAETNMQKEAEVAVGSVPDENGDGSPMECSPSETEVANDSVDGNQTTPELYVSSENDKSLSSYSDCVRSESTVGYVPVENAVSLPTGLDNGPVVEQEENGASLITEDFPTCAADGARQDTKVEIFDPINGANVVSCPDDGTKSESEAENGPNEDDTRLACSGNDVRPETIISFGSIKFPCGDGNVEHHASKAAPKCSSCEPGDVDDLVLMASDLKDSVENRSNLPTNAVAEMKSESEVEKMSAGSNKDLVSEPKVLNDSVVNSESVINSVAHAVDVKIEGDQISTKDIDVGNEGDQITSVDSDDKLTCQEARSVLGNGTSSSLEFLSTDALDSQNVPVEVGKRPFYFLIRVPRYDDEKVREEIKLAQLQVDEKTKSRDAIRSEIQIKRAVCKEYSEKFEAALSEERAARDLLKSKFQEMDSVQSVINRVKNAMSVKDIDGRIRHMEHAIEHETLPLKEEKQLIRDIKQLRNVREQLSSNMGRQEEVQQALDQKSQVEEQSKILREEVDSLKYKVQKAEVITKAAKKKYYDENEKLNELQARFKAADDIRQEAYTHLQSLRKKLSEKNKYFRMYKDNLKAANDYASAGDKEALQRLCVNEVETIMELWNNNDEFRKEYVRCNTRSTLRRLRTLDGRSLGPDEEPPVIPNFLNERIGRSLFAPTKDSSVLIVSTVEREKQMVPATAESADDKSVVNVTNQKNRTAKNKNPTKSATGAVSATISGRDEIEETKEEHKQTKEEEELARKAEELRKEEEAAKLKEQRRLEEKAKAKEALERKKRNAEKAQARAELRAQKEAEQKQREREKKARKKERRKSSSAEGTEGCNEAESAPSSETSFETTLDSEIIEKPRAITKKPHKSSQFTKQPKSKSIPPPLRSRGKRRIQSWMWVVLIALLVLALFLLGNSGFSYGLGLRNFGF* 1478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 368568 375676 - Vvi18g25 Vvi18g25 779728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g25 1477 MobiDBLite consensus disorder prediction 495 546 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 576 605 - -
Vvi18g25 1477 Coils Coil 1018 1072 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 260 386 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 1379 1399 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 1239 1436 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 1282 1363 - -
Vvi18g25 1477 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 98 1477 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 514 541 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 586 605 - -
Vvi18g25 1477 Gene3D - 240 398 - -
Vvi18g25 1477 Coils Coil 1282 1373 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 1248 1277 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 260 352 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 695 719 - -
Vvi18g25 1477 MobiDBLite consensus disorder prediction 372 386 - -
Vvi18g25 1477 PANTHER CALPONIN-LIKE DOMAIN PROTEIN 98 1477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g25 - - - vvi:100261635 2452.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g25 Blo01g01657 . . . Bpe02g00286 . . . . . Cma01g02052 Cma09g00011 Car01g01616 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02435 Csa04g02749 . . . . . . . . . . . Cmo01g02107 Cmo09g00011 . . . . . Cpe02g00007 . . . . . . . . . . . . . . . . Chy07g00437 Cme07g00014
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011484 0 2 2 0 2 0 2 0 0 1 0 1 2 1 1 2 0 0 1 0 1 1 1 1 1 1 1 1 0 1 26