Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g250 ATGGCGACTAGGGTTTCGATCTGCTTGTTTGTATTGGCTTTTGCCTTCTCAATCTTAGCTTCGTCTCCGGTGAAGATCTCGGCTGCGGAGGATGAAGCTAAAGAGTTCGTCCTCACTTTGACGCACTCTAACTTCTCTGACATTGTCAGTAAGCACGACTTCATCGTCGTTGAGTTCTACGCTCCATGGTGCGGCCACTGTAAGAAAATTGCACCTGAGTATGAGAAGGCTGCTTCTATACTGAGTAGTCATGACCCTCCAATTATTCTTGCCAAAGTTGATGCCAATGATGATGCAAACAAAGAGCTTGCATCAGAATTTGAGATTAGGGGCTTCCCAACTCTTAAGATTTTGAGAAATGGAGGGAAATCTATTGAAGAGTACAAAGGTCCTCGTGAGGCCGATGGTATTGTTGAGTATCTGAAGAAACAAAGTGGTCCTGCTTCTGCTGAGATAAAATCTGCTGAAGATGCTAGCAGTCTTATCGTTGACAATAAAATTGTCATTGTTGGAGTGTTCCCAAAGTTTTCTGGAGAGGAATTTGAGAACTTCACGGCTGTAGCTGAGAAATTTCGCTCTGACTATGATTTTGTTCATACTTCGGATGCCAAATTCCTTCCTCGTGGGGAATCATCAGTGACTGGCCCCTTGGTTAGGCTGTTGAAGCCATTTGATGAACTCTTTGTTGATTTCCAGGATTTTCATGTTGATGCTCTGGAGAAGTTTGTTGAGGAATCCAGTGTGCCTATTGTCACACTCTTTAACAAGGATCCTAGCAACCACCCTTTTGTTATCAAATTCTTCAATGGTCCCAATGCCAAGGCCATGCTGTTTCTAGACCACAGCAGTGAGCTTTTTGACGCTTTTAAGTCAAAGTATCATGAAGTTGCTGAACAATACAAAGGAAAAGGCATAAACTTCCTCCTGGGAGATCTTGAAGCTAGTCAAGGTGCTTTCCAGTATTTTGGACTTAAGGACGACCAGGTGCCTCTCATCGTTATACAAACCAATGATGGACAGAAATATCTGAAACCTAATTTGGAGCCTGACCATATTGCACCTTGGGTGAAGGAATACCAGGATGGCAAAGTGCTACCATACAAAAAATCCGAACCTATCCCTGAAGTCAACAATGAACCTGTGAAGGTGGTCGTAGCTGATACCCTCCAGGAAATAGTTTTTAACTCTGGAAAAAATGTTCTGGTGGAGTTTTATGCTCCTTGGTGTGGGCATTGCAAAAAATTGGCTCCAATCTTGGATGAAGTTGCTATCTCCTTTGAAAATGATGCTGATGTGGTCATTGCAAAGCTGGATGCAACTGCAAATGATATCCCAAATGACACTTTCGATGTGAAAGGATACCCAACTCTGTACTTTAAGTCTGCTAGCGGAAACATCTCGCAGTATGAAGGGGATAGGTCGAAGGAAGACATCATTGAGTTCATTAAGAAGAATCGGGATAAGGCTGCTCAGCAAGAAGGCTCAAAAGATGAGCTGTGA 1500 43.07 MATRVSICLFVLAFAFSILASSPVKISAAEDEAKEFVLTLTHSNFSDIVSKHDFIVVEFYAPWCGHCKKIAPEYEKAASILSSHDPPIILAKVDANDDANKELASEFEIRGFPTLKILRNGGKSIEEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSLIVDNKIVIVGVFPKFSGEEFENFTAVAEKFRSDYDFVHTSDAKFLPRGESSVTGPLVRLLKPFDELFVDFQDFHVDALEKFVEESSVPIVTLFNKDPSNHPFVIKFFNGPNAKAMLFLDHSSELFDAFKSKYHEVAEQYKGKGINFLLGDLEASQGAFQYFGLKDDQVPLIVIQTNDGQKYLKPNLEPDHIAPWVKEYQDGKVLPYKKSEPIPEVNNEPVKVVVADTLQEIVFNSGKNVLVEFYAPWCGHCKKLAPILDEVAISFENDADVVIAKLDATANDIPNDTFDVKGYPTLYFKSASGNISQYEGDRSKEDIIEFIKKNRDKAAQQEGSKDEL* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2791845 2798321 + Vvi18g250 Vvi18g250 779953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g250 499 TIGRFAM pdi_dom: protein disulfide-isomerase domain 40 144 IPR005788 GO:0003756
Vvi18g250 499 TIGRFAM pdi_dom: protein disulfide-isomerase domain 385 485 IPR005788 GO:0003756
Vvi18g250 499 PANTHER PROTEIN DISULFIDE-ISOMERASE 13 494 - -
Vvi18g250 499 Gene3D Glutaredoxin 250 374 - -
Vvi18g250 499 SUPERFAMILY Thioredoxin-like 247 378 IPR036249 -
Vvi18g250 499 TIGRFAM ER_PDI_fam: protein disulfide isomerase 37 493 IPR005792 GO:0003756
Vvi18g250 499 ProSiteProfiles Thioredoxin domain profile. 27 146 IPR013766 -
Vvi18g250 499 SUPERFAMILY Thioredoxin-like 150 249 IPR036249 -
Vvi18g250 499 CDD PDI_b_family 149 245 - -
Vvi18g250 499 Pfam Thioredoxin 37 143 IPR013766 -
Vvi18g250 499 Pfam Thioredoxin 381 484 IPR013766 -
Vvi18g250 499 Gene3D Glutaredoxin 25 144 - -
Vvi18g250 499 ProSiteProfiles Thioredoxin domain profile. 359 487 IPR013766 -
Vvi18g250 499 CDD PDI_a_PDI_a'_C 380 482 - -
Vvi18g250 499 Pfam Thioredoxin-like domain 173 357 - -
Vvi18g250 499 ProSitePatterns Thioredoxin family active site. 56 74 IPR017937 -
Vvi18g250 499 PANTHER PROTEIN DISULFIDE ISOMERASE 13 494 - -
Vvi18g250 499 Gene3D Glutaredoxin 375 490 - -
Vvi18g250 499 CDD PDI_a_family 38 141 - -
Vvi18g250 499 PRINTS Thioredoxin family signature 55 63 - -
Vvi18g250 499 PRINTS Thioredoxin family signature 63 72 - -
Vvi18g250 499 PRINTS Thioredoxin family signature 108 119 - -
Vvi18g250 499 Gene3D Glutaredoxin 145 249 - -
Vvi18g250 499 SUPERFAMILY Thioredoxin-like 346 487 IPR036249 -
Vvi18g250 499 ProSitePatterns Thioredoxin family active site. 401 419 IPR017937 -
Vvi18g250 499 CDD PDI_b'_family 264 359 - -
Vvi18g250 499 SUPERFAMILY Thioredoxin-like 37 147 IPR036249 -
Vvi18g250 499 Coils Coil 482 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g250 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - vvi:100259138 986.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1263 Vvi18g250 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48