Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g251 ATGAAGCAAGACAATGAAAGCACCCAGCAGCAGAAGCAGCTGGAACAGCATTTTCATGTTTTAGCGGTGGATGATAGTCTTATTGACAGAAAGCTTCTGGAGAAGCTGCTCACTGTTTCTTCATATCATGTGACTTGCGTGGAATCTGGGGATAAAGCTCTTGAGTACCTGGGTCTGCTAGATGGCCGAGACAATGATACTACATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCATCATCATCTTCTTCAGCCAAACCTTCCCAGCAAGAGATGCAGGGGTTGAAAGTGAACTTGATCATGACAGACTATTGTATGCCCGGGATGAGCGGTTATGATTTGCTGAAACGAGTCAAGGGATCTTCATGGAAAGATGTTCCAGTTGTTGTCATGTCATCAGAGAATGTACCCTCCAGAATCAACATGTGTTTGGAAGGAGGGGCAGAAGATTTCCTGTTGAAGCCTGTTCAGTTATCGGATTTGGAGAAGCTTCAACCTCATCTACTCAAATCTCTTAGCCAGTACCCCTGTGAAAACATCAACAGTAGTAACGAGGATGACGAAAACATAAATAAAAACAACAGTACTAGTTGCAGCAGCAGTAAGAGCAACAATGGAGTTTGCAAAAGGAAGGCATTAGTGTCTGCAGATCCCTTAGAGAGAAGATCAAAACTAAAAGATTAG 699 42.63 MKQDNESTQQQKQLEQHFHVLAVDDSLIDRKLLEKLLTVSSYHVTCVESGDKALEYLGLLDGRDNDTTSSSSSSSSSSSSSSSSSSSSSAKPSQQEMQGLKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVVMSSENVPSRINMCLEGGAEDFLLKPVQLSDLEKLQPHLLKSLSQYPCENINSSNEDDENINKNNSTSCSSSKSNNGVCKRKALVSADPLERRSKLKD* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2802827 2805264 - Vvi18g251 Vvi18g251 779954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g251 232 MobiDBLite consensus disorder prediction 185 211 - -
Vvi18g251 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 4 218 - -
Vvi18g251 232 SMART REC_2 18 170 IPR001789 GO:0000160
Vvi18g251 232 Pfam Response regulator receiver domain 94 168 IPR001789 GO:0000160
Vvi18g251 232 ProSiteProfiles Response regulatory domain profile. 19 174 IPR001789 GO:0000160
Vvi18g251 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 218 IPR045279 GO:0009736
Vvi18g251 232 Gene3D - 19 200 - -
Vvi18g251 232 MobiDBLite consensus disorder prediction 65 96 - -
Vvi18g251 232 SUPERFAMILY CheY-like 97 175 IPR011006 -
Vvi18g251 232 CDD REC_typeA_ARR 20 169 - -
Vvi18g251 232 SUPERFAMILY CheY-like 18 57 IPR011006 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14312 PF00072 Response_reg 7.00E-15 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g251 K14492 - vvi:100259216 386.341