Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g252 ATGGCTTCGATGTTCCTTAATGCGCCCTGCAATGTTGGGGCAATTAAGCATTTTGATTGCAAGAACTATGTTGGACTGAGGGCATCATCGAATCAGAAGTTGGATTGTGTTGGGCACACAATCAAGGCGCCTCCACGACGTCGTTTTATTGTAAGAGCCAGCGAAAGGAGGGATGAATCCATGAAAAAAATGGGATTGACTGATCAAGAGTGTGAAGCTGCGGTTGTGGCCGGAAATGTGCCGGAAGCGCCTCCCGTGCCTCCCAAGCCGGCGGCCCCAGCTGGAACTCCGTCGGTTCCTTTTCTTCCACTTAATCGACGCCCTCGTCGTAATCGAAGGTCGCCTGTATTGAGGGCATCATTCCAGGAAACAAATTTATCTCCTGCAAATTTTGTCTATCCACTCTTTATTCATGAAGGTGAAGAGGACACCCCTATTGGAGCCATGCCTGGATGTTATAGGCTAGGATGGAGACATGGACTTCTGGAGGAGGTTGCAAAGGCCCGGGATGTTGGTGTAAACAGTGTTGTGCTCTTTCCTAAAGTTCCAGATGCCTTGAAGTCTCCCACAGGAGATGAAGCATTCAATGACAATGGTTTAGTGCCCCGGACAATTCGATTGCTCAAAGACAGATACCCTGATCTTGTTATCTACACTGATGTTGCTTTAGATCCGTATTCCTCTGATGGGCATGATGGTATTGTCAGAGAAGATGGAGTCATAATGAATGATGAGACAGTGCATCAATTATGTAAACAAGCTGTTGCTCAGGCTAAGGCAGGAGCAGATGTTGTTAGTCCCAGTGACATGATGGATGGTCGTGTAGGAGCAATTCGAGCAGCTCTTGATGCTGAAGGCTTTCAACATGTGTCTATCATGTCCTATACAGCAAAGTATGCAAGTGCATTTTATGGTCCATTCCGAGAAGCATTGGACTCAAATCCACGCTTTGGAGACAAAAAAACTTATCAGATGAACCCAGCGAATTACAGAGAGGCTCTGACTGAGGTCCGTGAAGATGAGTCTGAAGGAGCTGATATCCTTTTGGTGAAACCTGGTCTGCCTTACTTGGATGTCATAAGGCTGCTTCGGGATAACTCGTCATTGCCAATTGCTGCATATCAGGTTTCTGGTGAATACTCAATGATCAAGGCTGGTGCTGTTCTCAAAATGATTGATGAAGAAAAAGTCATGATGGAGTCACTGATGTGTCTTCGACGGGCTGGTGCAGACATCATCCTCACGTATTTTGCACTACAAGCTGCTCGTTGTTTATGCGGTGAGAAGAGGTGA 1293 46.56 MASMFLNAPCNVGAIKHFDCKNYVGLRASSNQKLDCVGHTIKAPPRRRFIVRASERRDESMKKMGLTDQECEAAVVAGNVPEAPPVPPKPAAPAGTPSVPFLPLNRRPRRNRRSPVLRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLLEEVAKARDVGVNSVVLFPKVPDALKSPTGDEAFNDNGLVPRTIRLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQAKAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASAFYGPFREALDSNPRFGDKKTYQMNPANYREALTEVREDESEGADILLVKPGLPYLDVIRLLRDNSSLPIAAYQVSGEYSMIKAGAVLKMIDEEKVMMESLMCLRRAGADIILTYFALQAARCLCGEKR* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2813080 2821818 + Vvi18g252 Vvi18g252 779955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g252 430 CDD ALAD_PBGS_aspartate_rich 114 426 - -
Vvi18g252 430 PRINTS Delta-aminolevulinic acid dehydratase signature 223 237 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 PRINTS Delta-aminolevulinic acid dehydratase signature 254 273 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 PRINTS Delta-aminolevulinic acid dehydratase signature 292 311 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 PRINTS Delta-aminolevulinic acid dehydratase signature 344 360 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 PRINTS Delta-aminolevulinic acid dehydratase signature 369 384 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 PRINTS Delta-aminolevulinic acid dehydratase signature 399 418 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 PANTHER DELTA-AMINOLEVULINIC ACID DEHYDRATASE 2, CHLOROPLASTIC-RELATED 2 429 - -
Vvi18g252 430 MobiDBLite consensus disorder prediction 86 113 - -
Vvi18g252 430 Pfam Delta-aminolevulinic acid dehydratase 106 423 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 Gene3D Aldolase class I 95 430 IPR013785 -
Vvi18g252 430 SUPERFAMILY Aldolase 100 426 - -
Vvi18g252 430 SMART ALAD_2 103 425 IPR001731 GO:0004655|GO:0033014|GO:0046872
Vvi18g252 430 ProSitePatterns Delta-aminolevulinic acid dehydratase active site. 344 356 IPR030656 -
Vvi18g252 430 PANTHER DELTA-AMINOLEVULINIC ACID DEHYDRATASE 2 429 IPR001731 GO:0004655|GO:0033014|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g252 K01698 hemB, ALAD; porphobilinogen synthase [EC:4.2.1.24] - vvi:100264314 804.283
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g252 . . . Bda03g00013 . Bpe04g00007 Bma04g00012 . Cmo04g02479 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02295 . Cpe01g02056 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009710 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 3 1 1 1 1 1 30