Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g253 ATGATTCATTTGCAGAAATTATTAATCATCTTCTTGATCTTGATTTTCGCAGTCTCTGTGAATTGTATAGATAGAATCACAGCTCCAACCGCTTCCTCCGACCATGACTACTCCTACTTTGAGCCCCCCTGTTGCAACTCCAAGGCTCCAACCACTCAGAAAAACGTGAGCTCCGCCCTCGACCGGTCCACAACTCCGGCCGTGGCGGACTGCACAATTTGGATTAAGGAACCGGCCGTGTCGGACTGCGCAATTTGGAGGAAGGAATGCTCGGAGGAGATTCTGAGGATCGCGAAGCGGCCGGAGACGGTGGAGTGGTTGAAAGGCATAAGGAGGAGAATCCACGAGAATCCGGAGCTGGCTTTCGAGGAATTCAATACCAGCCGATTGATTCGCCGTGAATTGGATCAGATGGACATCAGCTATCGTTTTCCGCTGGCGAAGACCGGGATTCGAGCCACCATCGGCACCGGAGGTCCGCCGTTTGTTGCCGTCAGGGCCGACATGGATGCTCTCCCAATTCAGGAGGCCGTGGAATGGGAGCACAAAAGCAAAGTTGCTGGGAAAATGCATGCTTGTGGGCACGATGCACACGTTGCAATGCTTCTTGGGGCTGCCAGGATACTCAAGGCCCGTGAACATCATTTAAAGGGAACCGTAGTACTAGTGTTTCAACCAGCAGAGGAAGCTGGGAATGGTGCAAAACGGATGATAGGAGATGGGGCTCTGGAGAATGTGGAGGCCATATTTGCAGTTCATGTATCTCATGAACACCCGACGTCTATCATTGGGTCGAGGCCTGGTCCATTGCTAGCTGGGTGTGGCTTCTTCAGAGCTGTAATCACTGGAAAAGAGGGTGACGCCGGGAATCCTCACCGATCAGTGGACCCTGTTTTGGCTGCCTCAGCTGCGGTTATAAGTTTACAGGGCATTGTGTCTCGGGAAGCAAATCCACTGGACTCCCAGGTTGTGTCGGTGACTTCATTGAATGGGGGCGATAGTCTTGACATGATAGCCGACACCGTGGTTCTGGGTGGTACCTTCAGGGCCTTCTCCAACACAAGTTTCTATCAACTTCTTCAAAGAATAGAGGAGGTAATTGTAGAACAGGCCAGAGTTTTCAGATGCTCAGCAACAGTGGACTTCTTTGAGAAAGAGTACACCATTTATCCCCCAACAGTGAACGATGAAGGAATGTATGAGCATGTGAGGAAGGTAGCCATTGATCTGTTTGGCCCTACAAATTTCAGGGTGGTGCCACCGATGATGGGTGCTGAGGACTTCTCCTTCTACTCCGAGGTGGTCCCTGCTGCCTTCTTCTACATAGGCGTAAGAAACGAGACCCTAGGGTCTATACACACAGGCCACTCCCCTTATTTCATGATTGACGAAGATGCTCTCCCTATGGGTGCTGCAGCTCATGCTGCCATTGCCGAGAGATATCTCAACGAGCACAGACGATGA 1464 51.23 MIHLQKLLIIFLILIFAVSVNCIDRITAPTASSDHDYSYFEPPCCNSKAPTTQKNVSSALDRSTTPAVADCTIWIKEPAVSDCAIWRKECSEEILRIAKRPETVEWLKGIRRRIHENPELAFEEFNTSRLIRRELDQMDISYRFPLAKTGIRATIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAARILKAREHHLKGTVVLVFQPAEEAGNGAKRMIGDGALENVEAIFAVHVSHEHPTSIIGSRPGPLLAGCGFFRAVITGKEGDAGNPHRSVDPVLAASAAVISLQGIVSREANPLDSQVVSVTSLNGGDSLDMIADTVVLGGTFRAFSNTSFYQLLQRIEEVIVEQARVFRCSATVDFFEKEYTIYPPTVNDEGMYEHVRKVAIDLFGPTNFRVVPPMMGAEDFSFYSEVVPAAFFYIGVRNETLGSIHTGHSPYFMIDEDALPMGAAAHAAIAERYLNEHRR* 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2822056 2827234 - Vvi18g253 Vvi18g253 779956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g253 487 Pfam Peptidase dimerisation domain 277 371 IPR011650 -
Vvi18g253 487 CDD M20_IAA_Hyd 107 482 IPR044757 GO:0009850|GO:0016787
Vvi18g253 487 Gene3D Zn peptidases 109 467 - -
Vvi18g253 487 PANTHER PEPTIDASE M20 FAMILY MEMBER 67 485 IPR017439 GO:0016787
Vvi18g253 487 SUPERFAMILY Bacterial exopeptidase dimerisation domain 273 382 IPR036264 -
Vvi18g253 487 Gene3D - 272 390 - -
Vvi18g253 487 SUPERFAMILY Zn-dependent exopeptidases 102 484 - -
Vvi18g253 487 TIGRFAM amidohydrolases: amidohydrolase 109 470 IPR017439 GO:0016787
Vvi18g253 487 Pfam Peptidase family M20/M25/M40 164 479 IPR002933 GO:0016787
Vvi18g253 487 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 67 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g253 K21604 IAR3, ILL6; jasmonoyl-L-amino acid hydrolase [EC:3.5.1.127] K14664 vvi:100264396 967.992
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35