Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g254 ATGGCTTTGAAATCGGCTCTGGAGCTTAACCTCATCGAAATTTTGGCCGGAGCCGGCGACGGCGCGTTCCTCTCTCCCTCCGAGATCGCGGCTTACCTTCCCGCCCGGAACCCCGATGCGCCGGTCCTGCTGGACCGGGTTCTGAGGCTTCTCGCCAGCTACTCTATTCTCAAGTGCTCTCTGCGGACCCTTGACAATGGTGAAGTGGAGAGATTGTACGGCGTTGGACCCATTTGCAAGTTCCTCACCCGGAATCCAGACGGTGGGTCGATTGGTCCTCTGTTTCTGTTGCACCACGACAAGGTCTTCATGGAGAGCTGGTACCACTTGAATGATGCTATACTGGAAGGAGGAATTCCCTTCAATCGGGCGTACGGAATGACAGCGTTTGAATACCCAGGAACAGATCAAAGATTCAACAGGGTGTTCAATGAGGCAATGTCAAATCATACTACGTTGATAATGAAGAGGATACTCCAGATTTACAAAGGGTTTGAAGGCCTCAAAGTGTTGGTTGATGTGGGAGGTGGTATTGGGGTCACTCTCAGAATCATCACTTCAGAGTATCCTCAGATTAAGGGCATCAATTATGATCTACCTCATGTTTTAGCAGACGCCCCCTCTTATCCTGGTGTGGAGCATGTTGGGGGAGATATGTTTGAGAGTGTTCCCAAAGGGGACGCCATTTTTATGAAGTGGATTCTTCATGACTGGAGTGATGAGCACTGTCTGAAGCTTCTCACCAACTGCTTTGAAGCTCTCCCTGATAACGGGAAGGTGATCATCGTGGAATCCATTCTTCATGTGGCTCCAGAGAACACAGTCTCAGCCAACATTCCTTTCGAGCAAGATCTACTCATGCTGGCTCAAAACCCTGGAGGAAAAGAAAGGACCCAGAAGGAGTATGAGACCTTGGCCATAAAATCAGGATTTTCTTGCTGCAAGGTCATCTGCAGTGTTTACAACAGCTGGGTTATGGAGTTCCACAAGACAGCACATCCATAG 1005 49.45 MALKSALELNLIEILAGAGDGAFLSPSEIAAYLPARNPDAPVLLDRVLRLLASYSILKCSLRTLDNGEVERLYGVGPICKFLTRNPDGGSIGPLFLLHHDKVFMESWYHLNDAILEGGIPFNRAYGMTAFEYPGTDQRFNRVFNEAMSNHTTLIMKRILQIYKGFEGLKVLVDVGGGIGVTLRIITSEYPQIKGINYDLPHVLADAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLTNCFEALPDNGKVIIVESILHVAPENTVSANIPFEQDLLMLAQNPGGKERTQKEYETLAIKSGFSCCKVICSVYNSWVMEFHKTAHP* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2845414 2847132 + Vvi18g254 Vvi18g254 779957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g254 334 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE-LIKE ISOFORM X1 1 330 - -
Vvi18g254 334 Pfam O-methyltransferase domain 107 312 IPR001077 GO:0008171
Vvi18g254 334 PANTHER O-METHYLTRANSFERASE 1 330 IPR016461 GO:0008168
Vvi18g254 334 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 330 IPR016461 GO:0008168
Vvi18g254 334 PIRSF O-mtase 1 330 IPR016461 GO:0008168
Vvi18g254 334 Gene3D - 1 82 IPR036388 -
Vvi18g254 334 Pfam Dimerisation domain 1 52 IPR012967 GO:0046983
Vvi18g254 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 87 328 IPR029063 -
Vvi18g254 334 SUPERFAMILY Winged helix DNA-binding domain 1 85 IPR036390 -
Vvi18g254 334 Gene3D Vaccinia Virus protein VP39 83 330 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g254 K13066 - vvi:100242108 685.256