Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g260 ATGACCATTGTGGCTACTGCTGCTGCCCTCTCTCTTCCATTATCTCTATGCCCAACTTCTAAGATCAACACCAAAAAGGGTGAAAGACGAGGGCTTCGGGTGTTTGCTGTATTTGGAGATGAAAGTGGGTCAGTGGAGAGGAAGAGCACATGGGGCACAATCTTTGATGTGGAGGATCCAAGGTCTAAATTCCCACAATCCAAAGGGAAGTTCTTGGATGTAAATCAAGCTCTTGAAGTAGCTAGATTTGATATTCAGTACTGTGATTGGCGGGCTCGGCAAGATCTGCTTACAATCATGCTCCTCCATGAAAAGGTTGTGGAAGTTCTAAATCCTTTGGCCCGTGAATACAAGTCCATTGGCACATTGAAGAAGGACCTTGCAGGGCTGCAAGAAGAGCTAGCACAAGCTCACAGACAGGTTCATATATCTGAAGCAAGGGTTGGCACTGCTTTAGATAAGTTGGCTTACATGGAAGAATTGGTTAATGATAGGCTATTACAAGACAGAAATACAGCAGATTCAAATCAAACTTCAACTTCAACTTCTCCTAGTACTTCCACAGCATCTCTTGATATGGTAAAGAGAAAGCTTCCCCAGAAAAGTTTGAATGTTTCAGGTCCTGTTCAGCCTTACCATCCTCGTCTGAAGAATTTCTGGTACCCTGTTGCTTTCTCCACAGACCTGAAGGATGATACCATGATTCCAATTGATTGCTTTGAGGAACCGTGGGTTGTCTTTCGTGGGCAAGATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGGGTGGGAGTACTCAACAGATGGGAAATGCGAGAAAATGCCGTCAACACGATTGCTTAATGTAAAAATAAAATCATTGCCGTGTTTAGAGCAAGAGGGAATGATCTGGATTTGGCCTGGCAGTGATCCTCCAACAGCCACCCTTCCTTCTTTACAACCTCCACCAGGATTTAAAATCCATGCTGAGATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGGATCTTGCACATGCCCCTTTCACTCATACATCCACCTTTGCCAAAGGATGGAGCGTGCCTAGCTTGGTAAAATTCTTGACACCTGCATCTGGACTCCAAGGATACTGGGATCCCTACCCCATAGATATGGAATTTCGACCACCTTGTATGGTGCTGTCAACCATTGGTATCTCAAAACCCGGGAAATTGGAGGGACAGAGCACCAAGCAGTGTGCGACACATCTTCATCAGCTCCATGTCTGCTTACCTTCATCAAGAGACAAGACAAGGTTACTGTACAGAATGTCACTGGACTTTGCTCCTGTGCTTCAGCACATCCCTTTCATGCAATATCTCTGGAGATATTTTGCAGAAAAGGTGTTGAATGAGGATCTACGGCTTGTACTTGGACAACAAGACCGGATGCTGATGGGGGCAAATGTGTGGAACTGCCCAGTATCATATGACAAGCTTGGAGTGAGGTACAGGCTATGGAGAGACGCTGTGGAACGAGGAGCTAAGCGATTACCCTTCACTGAATCAACATAA 1614 45.66 MTIVATAAALSLPLSLCPTSKINTKKGERRGLRVFAVFGDESGSVERKSTWGTIFDVEDPRSKFPQSKGKFLDVNQALEVARFDIQYCDWRARQDLLTIMLLHEKVVEVLNPLAREYKSIGTLKKDLAGLQEELAQAHRQVHISEARVGTALDKLAYMEELVNDRLLQDRNTADSNQTSTSTSPSTSTASLDMVKRKLPQKSLNVSGPVQPYHPRLKNFWYPVAFSTDLKDDTMIPIDCFEEPWVVFRGQDGKPGCVRNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCLEQEGMIWIWPGSDPPTATLPSLQPPPGFKIHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTKQCATHLHQLHVCLPSSRDKTRLLYRMSLDFAPVLQHIPFMQYLWRYFAEKVLNEDLRLVLGQQDRMLMGANVWNCPVSYDKLGVRYRLWRDAVERGAKRLPFTEST* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2881692 2885346 - Vvi18g260 Vvi18g260 779963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g260 537 Gene3D - 214 336 IPR036922 GO:0051537
Vvi18g260 537 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 220 320 IPR017941 GO:0051537
Vvi18g260 537 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 73 534 - -
Vvi18g260 537 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 73 534 - -
Vvi18g260 537 SUPERFAMILY Bet v1-like 316 526 - -
Vvi18g260 537 Pfam Pheophorbide a oxygenase 407 501 IPR013626 GO:0010277
Vvi18g260 537 SUPERFAMILY ISP domain 216 324 IPR036922 GO:0051537
Vvi18g260 537 Gene3D - 338 530 - -
Vvi18g260 537 CDD Rieske_RO_Alpha_Cao 203 331 - -
Vvi18g260 537 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 261 283 IPR015881 GO:0005506|GO:0051537
Vvi18g260 537 Pfam Rieske [2Fe-2S] domain 220 301 IPR017941 GO:0051537
Vvi18g260 537 Pfam Vanillate O-demethylase oxygenase C-terminal domain 353 377 IPR044043 GO:0016491
Vvi18g260 537 Coils Coil 120 147 - -
Vvi18g260 537 MobiDBLite consensus disorder prediction 168 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g260 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - vvi:100247245 1090.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41