Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g261 ATGATCTCTGTGTTGTTCGAGATTGTGTTTAACAAGAGAAGGGAGCTACTCTCTGTTGTTGGTGGCTTTTGTTTCTATCAATTTGCCAACTGGGTCATCCGCTCGTGGGTCTCCAAGGACCCTCTCCTGGTCAATACTTGCGTTTCCCTCCTCCACTCCTCCATCACCTCCGCTTCAGTGATTTTTATTTTGGTCAATGAGTTGATAAGGATGGGTTCCAATGGGATGTTTGAGCACTCAAAGCTGGTTGGGAACACTTGGCCCTGGGCATACCCAGCTCTGTGCTTTTCATGTGGCTACTTTGCGTACGATCAGTGGGATATGCTGCATTACCGATTGTACAGTGGTTGGATCCCTTCCATCCTAGTGCATCATCTGTTGCTACTTGTTTGCTTTACACTTGCATTATATCGGAATGTCACCATCAACTATCTTATTCTTACTCTCATTTGTGAGCTGCATTCTATCTTTTTGCACACGAGGAAAGTGAGACGGATGGCTGGTATTCGTGATGCAAAAAGCAAGGCGGTGAAGGCAGAATGGGTCCTCAGCTGGATCACCTTCATTGTAGCAAGGTTTGCCCCACACATTCTCATTACAATCAAGCTTATCAGAGATTCTCCAAGGTTCGAAAAGGGTGTGGAGTTGCCTCTAGCATTGTTTGGGATGGGAGGGATGAATTTGCTCAACACTTTCCTGGGTATTGATCTCTTCAGAGCTTACAGGAGAGAGAAGAGTTCTCAACATCATGAATGA 756 45.63 MISVLFEIVFNKRRELLSVVGGFCFYQFANWVIRSWVSKDPLLVNTCVSLLHSSITSASVIFILVNELIRMGSNGMFEHSKLVGNTWPWAYPALCFSCGYFAYDQWDMLHYRLYSGWIPSILVHHLLLLVCFTLALYRNVTINYLILTLICELHSIFLHTRKVRRMAGIRDAKSKAVKAEWVLSWITFIVARFAPHILITIKLIRDSPRFEKGVELPLALFGMGGMNLLNTFLGIDLFRAYRREKSSQHHE* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2885809 2894159 + Vvi18g261 Vvi18g261 779964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g261 251 ProSiteProfiles TLC domain profile. 38 246 IPR006634 GO:0016021
Vvi18g261 251 PANTHER TLC DOMAIN-CONTAINING PROTEIN FLD-1 2 249 - -
Vvi18g261 251 PANTHER CT120 PROTEIN 2 249 - -
Vvi18g261 251 SMART lag1_27 38 243 IPR006634 GO:0016021
Vvi18g261 251 Pfam TLC domain 45 233 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g261 - - - vvi:100267707 515.383
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g261 . . . . . . . . . Cmo15g00691 . . . . Sed01g3125 . . Bhi04g01915 Tan11g1277 Cmetu03g1464 . Hepe02g2272 . Lcy10g1225 Cla08g00589 Cam08g1004 Cec08g0594 Cco08g0703 Clacu08g0713 . Cre08g0524 . Cone7ag1529 . . . . . Cme03g00559 . . . Bda01g01428 Bpe02g01642 . . . . . . . . . Car15g00624 . . . . . . . . . . . . . . . . Lsi08g00435 . Chy03g00800 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011858 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30