Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g262 ATGGAAAAAAGGAAATGGCTGTGGAAAAGGAAGTCTTCTGAGAAAAGCCCTGGTGAGACTGAAAGTTCTGGATCAATATCCTCCCACTCTGAAAGATACTCGGATGACCAGGATGGATTGAAGTCATCTCCAAATCATAGCACTCAGTCACCAGAAGTTACATCCAAAGTTGCTACCAGTGGTGATGAAGTTAATGATAATGTGAAGAGTCTGACAGAGAAATTATCAGCTGCTCTTTTGAATGTTGGTGCTAAAGATGATTTGGTTAAGCAGCATGCCAAAGTTGCTGAAGAAGCTGTTGCAGGCTGGGAAAAGGCTGAAAATGAGGTGGTGGTTTTAAAGCAACAACTAGAGGCTGCAGTTCAGGAGAACTTAGTGCTAGAAGATCGAGTGAGCCGTCTTGATGGTGCCATCAAGGAATGTGTTAGGCAGCTAAGACAAGCAAGGGAGGAGCAGGAGGAAAAGATCAGCGAAGCAGTGGTGAAGAAAACCCGTGAGTGGGAATCCACCAAATTTGAGCTTGAGAGCCAGCTTCTTGAGCTCCAAACACAAGTAGATGCTGCTAAAGCTGAACCTCCTGCTTTGGAGAAAGAGAACTCAACCCTCAAGCTTGAGCTCCTTTCTCAATCTGAGGAGTTAGAGATTAGGACAATTGAGAGAGACTTGAGTACCCAAGCAGCAGAAACAGCTAGCAAGCAACATTTAGAAAGCATAAAGAAGGTAGCAAAGCTCGAGGCTGAGTGCCGAAGGCTAAAGGCCATGGCTCGTAAATCATCTTCAATCCATGATCATAGATCTGTTGCTGCTTCTTCACTTCATATTGAATCTCTCACTGATAGCCAGTCTGACAATGGAGAGCAGTTAAACATGGTGGATATCAGTTGTTAG 888 44.37 MEKRKWLWKRKSSEKSPGETESSGSISSHSERYSDDQDGLKSSPNHSTQSPEVTSKVATSGDEVNDNVKSLTEKLSAALLNVGAKDDLVKQHAKVAEEAVAGWEKAENEVVVLKQQLEAAVQENLVLEDRVSRLDGAIKECVRQLRQAREEQEEKISEAVVKKTREWESTKFELESQLLELQTQVDAAKAEPPALEKENSTLKLELLSQSEELEIRTIERDLSTQAAETASKQHLESIKKVAKLEAECRRLKAMARKSSSIHDHRSVAASSLHIESLTDSQSDNGEQLNMVDISC* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2899089 2903995 + Vvi18g262 Vvi18g262 779965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g262 295 MobiDBLite consensus disorder prediction 276 295 - -
Vvi18g262 295 Coils Coil 103 162 - -
Vvi18g262 295 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 1 293 - -
Vvi18g262 295 Pfam Filament-like plant protein, long coiled-coil 85 195 IPR008587 -
Vvi18g262 295 Pfam Filament-like plant protein, long coiled-coil 195 257 IPR008587 -
Vvi18g262 295 MobiDBLite consensus disorder prediction 1 65 - -
Vvi18g262 295 MobiDBLite consensus disorder prediction 1 17 - -
Vvi18g262 295 Coils Coil 171 191 - -
Vvi18g262 295 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 293 - -
Vvi18g262 295 MobiDBLite consensus disorder prediction 40 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g262 - - - vvi:100252368 501.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g262 . Blo12g00890 . Bda03g00283 . . Bma04g00240 . Cmo04g02471 . . . . . . Cpe06g00076 . . . . . . . . Cla08g00588 Cam08g1003 Cec08g0593 Cco08g0702 Clacu08g0712 . Cre08g0523 . Cone7ag1530 Cone17ag1283 Cone20ag0443 Lsi04g01729 . . . . Blo18g00184 . . . . . . . . . . . Car04g02288 Car09g00102 Cpe01g02050 . . . . . . . . . . . . . . . Lsi08g00434 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47