Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g271 ATGGGATTAAAAAAAGAAAAAGAAAAAAAAAAGAACTTGGATACCCGCACTTTCGCATTTGAAATTTTATTTTTCGCTCCTGGCAATCCGTCAATAGCGATGTTATCGACCAGCGGAGGTGACACCGTCAAGCTTTTCGACGTCTCCTTAGGGCTGGGCGACCCCTGCACTCTGAGCTACTCGCCTTCACCGGGTCACCATGTCTATTCAGTCAAGTGGAGTCACACCAATTTGGTTGTGGCAAGTGCTGGAGAAGACAAGAAGATCTCTCTATGGCGGAAAAACGGACAAATTATCGGAACTATTCCAGTTTTTGGGAGTGAAAGCGGAGAGAACATCGAGGAATCTATATTTGCTATCAATTTTAGCAACAAGGGATCCAGGTACATATGTTCTGGGGGAAGCGGTAAAGTTGTAAGAATATGGGATTTGCGGAGGAGATGTTGCATTAAGTGGTTGAGGGGTCATACTGATGTGATAACTGGGGCAATGTACAATTACAAAGATGAGCACTTGGCTTCCATTAGTTTAAATGGGGTTCTTATTCTACACAACCTTGCATCTGGTGCAAAGGTGGCTGAACTCAAGGACCCCAATCAACAGGTATTAAGAGTGCTTGATTATTCACGAATTAGTCGACACCTTTTGGTGACTGCTGGTGATGATGGGTCAATACATCTGTGGGATACAACTGGTCACAGCCCAAAGGTTTCTTGGTTGAAGCAGCACTCTGCACCAACTGCTGGGGTTACCTTCTCACCCTCCAATGATAAGATGATTGCTAGTGTAGGTCTAGATAAAAAGTTGTATACTTTTGACAGAGGGTCCAGAAGACCTTCATTTTGCATTCCTTATGAGATGCCATTCTCTTCATTGGCATTTAGAGATGATGGCTGGACTCTAGCAGCTGGAACAAGTCATGGCCAAGTGGTATTCTATGATGTCCGTGGAAAACCACAGCCTTTCTCCATTCTCTGTGCTTATGGTAATTCAGAGGCTGTCACAAGTTTATGCTGGCAAAGATCAAAACCTGTAATTGTAGATGAAAGTAATTGCAGCCCTGAGATTGCTCTTATGGGAGGTGCTACCGAAGATTCAGTCATTATTCCTGACCCACTTCCGTCTGTAACATCATCAAGTCTTTCACTATCCATGGCGTTACCTGGTTCTCAAAATCCTGGCCGCATAGGTCCGTCAACAGAAGCATCTTCACTTACTGTAACCAGTGGTGGAACATTGGCAAAATTACGTGCTCCTCATTCTGGTTATACCTTCAAGGACGATATGGAGGTGTTTTCTCCTCTCGTGGATGTTCAACCACTTACACCTACACTTGATAAGCTTTGGGATGATCATGAAGGAGCAAAGAAAGATTATCTACCTTTTGATAAGAAGCCTTCGTCTCTGTTTTCTTCACCTAGTAGGAGATCCTCTATAGCAGAGGGTGAGGGCAATAATCATCCAATATTCAATTGGAAATCCAATTCAACTTCCAGGCAGGACACTCACGCTTCTCTTACAGCACCGGGATCATCTACTACTTCATCTTTCAAAAGTGAAGACTCTTCCATCACTCCTCCAAAAGCCTGGGGTGGTGAGAGATTTTCTGATAAATTTACCCACCACCGTCAGCCCACACTGTCTCGCTTTGGGATGTTGGCAGCTAGTGGTCTAGCATCAGGGTCAATGTTTTCTGGATTACAAGAGCTATGGTCATCAACAAGTCATATGAGTGGGAGCTCCTCGTCAAATCAAAACCTGACTTTTGGAAATTTGCGTGCCAAAGATTTCTCTTTTAATCAGGAAACTCCACTGGGAGTCCCAGAAAATTTCCCTTCTATTTCCGTATCTCTGCCTCTAGATACAAAAGCTGTCACCAGACAGGCTAACCTTGAACTGCCAGGATCACCAGCATCCTTGACCCTCCCACGAAGATTTTCCACTTATGCCGAGAGAATAAGCACTACCTTATCCTCCAGTGATGGGACCTCTCCTGTTGGTTCACCAAAAATAAAGAAAACAGGAGCTGAAACCAGAGCAGAAATTTTGAATGGCTTATTTAATTCTGTTACATCAGCTGCCTCAGAAGCAGGGACTCATCCAATGGGAGGAACATCACTATCCCAGAAAGGTCCTTCTCAGTCAGATACCCAGCAGGGAACCTCATTTACCCTTCAGATGTTTCAAAGCACCCTTGAAGAAACCCTTGATTCCTTTCAGAAATCCATACACAAAGATATGAGGAACCTTCACATCGAAATTCTGAGACAATTTCATATTCAAGAGACAGAAATCTCAAGTGTGGCAAGCTCGATTTTGGAAAACCAAGCTGAGCTGATGAAAGAAATCCAGTCTCTCCGGAAAGAGAATCAGCAACTCCGCCAATTGCTTTGA 2394 43.9 MGLKKEKEKKKNLDTRTFAFEILFFAPGNPSIAMLSTSGGDTVKLFDVSLGLGDPCTLSYSPSPGHHVYSVKWSHTNLVVASAGEDKKISLWRKNGQIIGTIPVFGSESGENIEESIFAINFSNKGSRYICSGGSGKVVRIWDLRRRCCIKWLRGHTDVITGAMYNYKDEHLASISLNGVLILHNLASGAKVAELKDPNQQVLRVLDYSRISRHLLVTAGDDGSIHLWDTTGHSPKVSWLKQHSAPTAGVTFSPSNDKMIASVGLDKKLYTFDRGSRRPSFCIPYEMPFSSLAFRDDGWTLAAGTSHGQVVFYDVRGKPQPFSILCAYGNSEAVTSLCWQRSKPVIVDESNCSPEIALMGGATEDSVIIPDPLPSVTSSSLSLSMALPGSQNPGRIGPSTEASSLTVTSGGTLAKLRAPHSGYTFKDDMEVFSPLVDVQPLTPTLDKLWDDHEGAKKDYLPFDKKPSSLFSSPSRRSSIAEGEGNNHPIFNWKSNSTSRQDTHASLTAPGSSTTSSFKSEDSSITPPKAWGGERFSDKFTHHRQPTLSRFGMLAASGLASGSMFSGLQELWSSTSHMSGSSSSNQNLTFGNLRAKDFSFNQETPLGVPENFPSISVSLPLDTKAVTRQANLELPGSPASLTLPRRFSTYAERISTTLSSSDGTSPVGSPKIKKTGAETRAEILNGLFNSVTSAASEAGTHPMGGTSLSQKGPSQSDTQQGTSFTLQMFQSTLEETLDSFQKSIHKDMRNLHIEILRQFHIQETEISSVASSILENQAELMKEIQSLRKENQQLRQLL* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2950359 2959283 + Vvi18g271 Vvi18g271 779974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g271 797 MobiDBLite consensus disorder prediction 468 535 - -
Vvi18g271 797 PANTHER PROTEIN NEDD1 29 797 IPR044621 GO:0010968|GO:0140496
Vvi18g271 797 MobiDBLite consensus disorder prediction 488 523 - -
Vvi18g271 797 Coils Coil 769 797 - -
Vvi18g271 797 PANTHER PROTEIN NEDD1 29 797 - -
Vvi18g271 797 MobiDBLite consensus disorder prediction 654 673 - -
Vvi18g271 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 229 IPR001680 GO:0005515
Vvi18g271 797 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Vvi18g271 797 Gene3D - 7 209 IPR015943 GO:0005515
Vvi18g271 797 SUPERFAMILY WD40 repeat-like 38 346 IPR036322 GO:0005515
Vvi18g271 797 Gene3D - 210 393 IPR015943 GO:0005515
Vvi18g271 797 MobiDBLite consensus disorder prediction 695 719 - -
Vvi18g271 797 SMART WD40_4 233 273 IPR001680 GO:0005515
Vvi18g271 797 SMART WD40_4 188 229 IPR001680 GO:0005515
Vvi18g271 797 SMART WD40_4 146 185 IPR001680 GO:0005515
Vvi18g271 797 SMART WD40_4 95 143 IPR001680 GO:0005515
Vvi18g271 797 SMART WD40_4 276 314 IPR001680 GO:0005515
Vvi18g271 797 SMART WD40_4 53 93 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g271 K16547 NEDD1; protein NEDD1 - vvi:100250597 1446.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g271 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003677 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 2 46