Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g272 ATGGCCGACGACGCGGCGAAACTGGTCGCCGAGATCGGCGGTCGACTCCATCAGCAATCTCGTCCGACCAAGGATTTTCTCATAAAGTCTCTTCGACAAGCTGCAAGTGCTTTGTTGGAATTAGAGCAGAAGTCTTCATTAGAACCCGCCATAAAGCCTCTGAGTGGATCATTTGTTAAGCATGGTTTGCTTCATAATAAAGATAAAGACGTTAAACTTCTAGTGGCAATCTGTTGCAGTGAAATCATTCGAGTCATGGCACCAGAACCACCTTTTGATGATAAAGAATTGCGGGAAATTTTTGAACTTTTTGTTAGCATGTTTGCTGAGCTAGCTAATACCACAAGCCCATATTTCTCGAGGAGGGTTAAAATTCTAGAGACTTTTGCTAAATACAACTTTTGCATGCTAATGCTGGACATCAACTGTGATATTTTAGTGCTTGAAATGTTCAATACTTTCTTCTCTGTTGCAAGAGAACATCATCAACAAAGTGTGGTTAAGGCAATTTTGTCTATAATGACACTTATTCTAAAGGAGAAGGTCTCTCAGCCGCTCTTGGATGTGATTTTGCAGAACCTTTTGAAGGAGGGAAAGGGTGCAACTGCTTCTCCTTCCCGGATTGCTGTTTCTGTTGTTCAAAATTGTGCTGAAGAGCTTGAGCCCTTTGTTTGTGGGTTTTTAACATCTTGTATTTTGGACAGAGATGCTGTAGGCAACGAACTTAAAGAGTTCTATCATGAAATTATTTTTGAAATTTTCCAATGTGCTCCCCAGATGCTTCTTGCGGTCATCCCAAACTTGACCCAAGAACTTTTGACTGATCAGGTTGATGTCAGAATAAAAGCTGTTAATTTGATTGGAAAACTTTTTTCACTGCCTGAACACCATGTTGTGCAAGAATATCGACATCTCTTTGTAGAGTTTCTAAAAAGATTCTCTGACAAGTCTGCAGAAGTTAGAGTTAGTGCTCTACAATGTGCTAAAGCTTGTTACATGGCCAATTCCTCTGGGACTGAATCACTTGAAATTCTCACTGCTGTTGAAGGTCGATTATTAGATTTTGATGATAGAGTCAGAATGCAGGCAGTTATTGTTGTTTGTGACCTTGCCAAGTCAAACCTGAAATTTCTCCGACCTGAACTAATATCTCGAGCTACTGACCGACTTCGTGATAAGAAGTTATCTGTTAGAAAGAAAGCTTTGCAGAAGTTGCTTGAAGTATATCGAGAGTATTGTTCCAAGTGTTCTGAAGGTCACATAGCAATTACTGACCATTTTGAACAGATTCCATGTAGAATTTTGATGCTTTGCTATGATAAAGACTGTAAGGAGTTCAGACCCCAAAACATAGAGCTTGTACTTGCGGAGGATTTATTTCCAGCTACTCTTTCAGTTGAGGAGAGGACAAGGCACTGGATCTCATTTTTCTCACTTTTTACTCCTCTTCATGTAAAGGCATTGAACTCCATTTTATCTCAGAAACGAAGGTTGCAAACAGAGATGCAAATCTATTTGGCGTTGCGAAAGAAAGAGAAGGAGAATGTTGTTGAAGAAGTGCAGAAGAGGATTCAAGCTTCATTTTTGAAAATGTCAGCCTCCTTTCCAGACTCTTGCAAAGCTGAAGAATGCTTTCATAAATTAAACCAAATGAAAGATAATAGCATATTTAAGGCTTTGCTACAGCTTTTGGATGAAGTCACCTTAACAAGTGCTGAGACCACCAGAGATAAATTTCTGAAAATGATAGGGGAGAGGCATCCACATTTTGAGTTTCTACAATCTCTTTCCAAGAAATGCTTGTTTAATATATTCAGCTCTGAGCATGTACGCTGTATTTTAGAGCATATTTCCAGCAACAGAGTTGGCAATAAGCACTTGGAGGTTTCTTCTTTCGACCTTCTTTTGGTTATTGTCAGCATTTTTCCTTCTCTTCTGAAAGGCTCGGAGAAACTGTTTCAAATGTTGTTATTTAAGGAGGACATCCCATTTCAAGAAAAATTGATTCAAGTGTTAGGAAAAGCAGGTCCTCACATTTCTATTAAACTCAGTGATATTTACCCTTCCTTGGAGAAGATATGCCTGGAGGGAAGTCGTGCTCAGTCCAAATTTGCTGTATCTGCAATTGCTGCTTTAGTTGGTACTTCTGAGCAGTTTGTTTTCTCAGAATTGTGCAAGGCACTTGTGGATTCTCTACATGGTGGGCAGAACATTCCAACTGTCCTGCAGTCTTTGGGTTGTATGGCACAACATTCTGTTTCTGCATTTGAAGCTCGAGATAAAGAGATCACATCATATATAAATGAAACATTTTTTCAAGTGGAACCATTGGACAATCTAGCTTCATTTGATGAAACTTCTGAATGCAGCAGCTCGTGCAAATTGAAGATTTATGCATTAAAAGCACTTGTCAGGAGCTTTTTGCCGCATCGAGGAACTCATGTCAAACGTCAAATTAACGACTTGTTGGACATTATGTCAGAAATGCTGCCAAAGGGTGATATCTCTTATGATACTGGGTCATGTGAAAATGATGAGGCTCATATCAGATTAGCTGCTGCAAAATCTGTTCTTCGACTTGCTGGAAGATGGGATTTGCATATTTCTCCCCATATCTTTCGCTCTACAATTCTAGTGGCAAAGGATCCTTCACCACTTATAAGGAGACTATTTCTTGACAAGACTCACAAGCTGTTGAAGGAACATGCTATACCTAGTAGATATGCATGTGCTTTTGCATTTGCTGGCCCGGATTGCCCCAAAGATCTGCAAGAGGATTCATTGAAATATATGGCAGAATTTATGAAAGAATACCGTAAAGAAGCTCAAGTACGCCAAACTTCTGTGATGCAAGGAGGAACCATTACCGATTACCCAGCATACATGGTGGTATTCTTGGTCCATGTTCTTGCTCATGATACTAATTTCCCATCTGAAACTTGTCAAGACGAAGAAATGTTTGCTCAGTTTTGCAGTCCCCTTTTCTTCGCCTTGCAAGTGTTAGTCAATGCTAGTTTTGTTGATGGTGGCATGGATCTTGACAATGACGCTATCTCATGTATATTTAGTATTTTCCGTGCTATTAAAAGGGCTGATGATGCTGTTGATGCTCAGAGAACTCTTAACCTACATATGCTGGCAGACATTGGCATCTCCATTCTTAAGGCATTAAATACCTGGGGCATTTCCATGTCTAATACCCCTGACAAAATTTTGCTGCCATCATCATTATATAGAATTAGTAGTGCAAAGAAAAGCGAGGAGGTTGATTCAACAAGACTTATTGGGTCTACTTTTGATGAAAAATTTCTTAAGAAGCTTATTCCTATTTTTAAATCTAATCTCTCTCTGCCTAGTACTGCGCATCCTAAACGTGGTCGAAAATGTCAGGACAGTTCACATTTAGATATTATAAAGAGCAACACTTTGAACCTGGCACCAAGTAGGGAAGTTGCATCATCAAAAAATGGGACAATAATAGGCCAGAGTTCATCCTTACATAGAAAGACTCAAAAAACTGTGATGCAGGAAATCAGTACTGGAGGAAGGCGAAAGCATCCTGTGTCTCCCACTGCTCACAAATCAGTTGGATTGCACAATGAATGTTGCATTAATAATGGGCACAAAAGTGATAAAGGCCGAAAATCTGAACCAAGTTTGGGGCAAGGGCAACTTTCATCTTCTTGTGGCTCTGCAACAATGAGACCTTTGACTGAGTCACAAATTTCCACCAAGAAGATGGTTTTACCACATGCAGCTTCTTTAAAAGCAAATGGCACAGCAAAAGAAAGTAGCAACATTACTACGAAACCTTCAAAATCTTCCAGATCCAAGCGTAAAGATCCTTGTAGTTCAGTGGAAATTATAAACAACAGTGAGGTATTGATTGGACAACGGATCAAATTGTGGTCTCCTGTTGATAAATGTTTCTATTCAGTCACTGTGGATGGGTTTAATTCTCAGAACAATACTCACAAGGTGGTATATGACAATGGTGCAATTGAAGCATTATGCTTGGCAAGTGAGAATTGGGAAACTATAAGTGATGGTTCCTTGTCAAAGACGGTTAAATTGGCACAGGAGACAAATGGTTTCCATATGCAGAAGTGTGATCCTCTGGAGATTTCTTCTCTCAGTAGTCTGAAGGAAACTGTTGATGCAGTTGGAGATGATGCATCCCAACAGCACGAAAATTTTCAAAATAAAGGGAGGACAAATTCACTTTATATGACAAATCCTGGTTCTGTAAAGGGAAAGCATGGCCAGAAGGTTTCTGTTGACACATTGGCATCAGAAGTTGTCAATATGAACGAGATTGCTGTAGGTAGAAGGACCCGGAGAAGGAAAACTTAA 4353 39.67 MADDAAKLVAEIGGRLHQQSRPTKDFLIKSLRQAASALLELEQKSSLEPAIKPLSGSFVKHGLLHNKDKDVKLLVAICCSEIIRVMAPEPPFDDKELREIFELFVSMFAELANTTSPYFSRRVKILETFAKYNFCMLMLDINCDILVLEMFNTFFSVAREHHQQSVVKAILSIMTLILKEKVSQPLLDVILQNLLKEGKGATASPSRIAVSVVQNCAEELEPFVCGFLTSCILDRDAVGNELKEFYHEIIFEIFQCAPQMLLAVIPNLTQELLTDQVDVRIKAVNLIGKLFSLPEHHVVQEYRHLFVEFLKRFSDKSAEVRVSALQCAKACYMANSSGTESLEILTAVEGRLLDFDDRVRMQAVIVVCDLAKSNLKFLRPELISRATDRLRDKKLSVRKKALQKLLEVYREYCSKCSEGHIAITDHFEQIPCRILMLCYDKDCKEFRPQNIELVLAEDLFPATLSVEERTRHWISFFSLFTPLHVKALNSILSQKRRLQTEMQIYLALRKKEKENVVEEVQKRIQASFLKMSASFPDSCKAEECFHKLNQMKDNSIFKALLQLLDEVTLTSAETTRDKFLKMIGERHPHFEFLQSLSKKCLFNIFSSEHVRCILEHISSNRVGNKHLEVSSFDLLLVIVSIFPSLLKGSEKLFQMLLFKEDIPFQEKLIQVLGKAGPHISIKLSDIYPSLEKICLEGSRAQSKFAVSAIAALVGTSEQFVFSELCKALVDSLHGGQNIPTVLQSLGCMAQHSVSAFEARDKEITSYINETFFQVEPLDNLASFDETSECSSSCKLKIYALKALVRSFLPHRGTHVKRQINDLLDIMSEMLPKGDISYDTGSCENDEAHIRLAAAKSVLRLAGRWDLHISPHIFRSTILVAKDPSPLIRRLFLDKTHKLLKEHAIPSRYACAFAFAGPDCPKDLQEDSLKYMAEFMKEYRKEAQVRQTSVMQGGTITDYPAYMVVFLVHVLAHDTNFPSETCQDEEMFAQFCSPLFFALQVLVNASFVDGGMDLDNDAISCIFSIFRAIKRADDAVDAQRTLNLHMLADIGISILKALNTWGISMSNTPDKILLPSSLYRISSAKKSEEVDSTRLIGSTFDEKFLKKLIPIFKSNLSLPSTAHPKRGRKCQDSSHLDIIKSNTLNLAPSREVASSKNGTIIGQSSSLHRKTQKTVMQEISTGGRRKHPVSPTAHKSVGLHNECCINNGHKSDKGRKSEPSLGQGQLSSSCGSATMRPLTESQISTKKMVLPHAASLKANGTAKESSNITTKPSKSSRSKRKDPCSSVEIINNSEVLIGQRIKLWSPVDKCFYSVTVDGFNSQNNTHKVVYDNGAIEALCLASENWETISDGSLSKTVKLAQETNGFHMQKCDPLEISSLSSLKETVDAVGDDASQQHENFQNKGRTNSLYMTNPGSVKGKHGQKVSVDTLASEVVNMNEIAVGRRTRRRKT* 1451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2960193 3039077 - Vvi18g272 Vvi18g272 779975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g272 1450 MobiDBLite consensus disorder prediction 1217 1247 - -
Vvi18g272 1450 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 6 1383 - -
Vvi18g272 1450 MobiDBLite consensus disorder prediction 1157 1283 - -
Vvi18g272 1450 MobiDBLite consensus disorder prediction 1157 1178 - -
Vvi18g272 1450 MobiDBLite consensus disorder prediction 1258 1272 - -
Vvi18g272 1450 Gene3D - 28 442 IPR011989 -
Vvi18g272 1450 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 6 1383 IPR039776 GO:0007064
Vvi18g272 1450 SUPERFAMILY ARM repeat 213 893 IPR016024 -
Vvi18g272 1450 Coils Coil 495 515 - -
Vvi18g272 1450 Pfam Sister chromatid cohesion protein PDS5 protein 25 1079 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g272 K11267 PDS5; sister chromatid cohesion protein PDS5 - vvi:100255781 2816.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g272 . . . Bda03g00009 . . Bma04g00007 . . . Cma01g01401 . . . . . . . . . . . . . . . . . . . . Cone4ag1405 . . . . . . . . . . . . . . . . Cmo01g01451 . . . . . . Cpe02g00541 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006492 1 5 1 1 0 0 1 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36