Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g278 ATGCATTCCTGTAACCAGAGGTCCAGAACGTATTTACAATGGAAAGATCTTACATTAATGGATCCATGCTCGAACTCCGACTCATGCAACGCCATGGTGGGTTACACGCTCTACACCGACCTTAAGGTCTCGGAAGTGGCGACCCTATTCCAAGTCGACCCCATTGCTATTCTCACCGCCAACGCCATTGACATTTCGTATCCGGATGTTGAGAATCACATCCTTCCCTCCCAGCTCTTCCTCAAAATCCCCATTTACTGCTCCTGCGTCGACGGAATCAGAAAATCAGTCACCACACGGTACAAGACTCGCCCCTCCGATACTCTCTCATCGATTGCCGATTCGATTTACGCGGGTCTTGTGTCCGCGGATCAGCTCAGGGAGGCGAATTCGATATCGGATCCTTCGGTTCTGGATGTGGGGCAGACCCTTGTGGTTCCGCTTCCTTGTACTTGCTTCAATGGGACTGATAATTTGTTGCCGGCCACTTATTTATCGTATGTGGTGAAAGTTGATGACACATTGACAGGCATTGCTTCCAGGTATTCGACTACTATTTCTGATCTAATGACTGTGAATGCAATGGGGAGTCCAGCAATTAAGGCTGGTGATATACTTGCTGTTCCTTTGCCAGCTTGTGCATCTAATTTTCCAAAATATGCTTCGGACTATGGGCTAGCTGTGCCAAATGGGAGTTATGCTATCACTGCAAGTCACTGTGTACAATGCAGTTGTGGGCCAGGAAGTCTCAATTTATACTGCATGCCAGCATCTTTGGCAGTCTCTTGTTCAAGTATGCAATGCAGGAATACTAACCTTATGCTCGGGAATGTTACAATGCAAAAGAGTAGTGCTGGCTGCAATGTTACATCTTGTAGCTATGGTGGTTTTGTCAATGGCACCATTATTGCTACGCTGACCACATCCCTTCAACCTCGATGTCCAGGGATCCAGCAATTTCCTCCACTTATAGCACCACCATCTTCAGTAATCAGGGATTCATTCTATGCCCCATCACCTTCTCCATCTCAGTCAGATGGTGCTGGAACAACAATTCCTAGTCCTTCGGTGGTGCCTTCAACAGGGTCAATTCCAGGTTTTGCTCCCGCCAATGGCCCAACTGGAAGTGCCTCTGATGCTAGCTCTTTGGTGAACCCCTTAGCCAGTTTCCCTGTTGTGATTGCCTTATGTTTGTTTTTCAAGTTAATGGTCTCGTCCTTTTTATAA 1227 47.11 MHSCNQRSRTYLQWKDLTLMDPCSNSDSCNAMVGYTLYTDLKVSEVATLFQVDPIAILTANAIDISYPDVENHILPSQLFLKIPIYCSCVDGIRKSVTTRYKTRPSDTLSSIADSIYAGLVSADQLREANSISDPSVLDVGQTLVVPLPCTCFNGTDNLLPATYLSYVVKVDDTLTGIASRYSTTISDLMTVNAMGSPAIKAGDILAVPLPACASNFPKYASDYGLAVPNGSYAITASHCVQCSCGPGSLNLYCMPASLAVSCSSMQCRNTNLMLGNVTMQKSSAGCNVTSCSYGGFVNGTIIATLTTSLQPRCPGIQQFPPLIAPPSSVIRDSFYAPSPSPSQSDGAGTTIPSPSVVPSTGSIPGFAPANGPTGSASDASSLVNPLASFPVVIALCLFFKLMVSSFL* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3097501 3101041 + Vvi18g278 Vvi18g278 779981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g278 408 SMART LysM_2 166 209 IPR018392 -
Vvi18g278 408 SMART LysM_2 100 147 IPR018392 -
Vvi18g278 408 CDD LysM 166 208 IPR018392 -
Vvi18g278 408 SUPERFAMILY LysM domain 165 210 IPR036779 -
Vvi18g278 408 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 20 393 - -
Vvi18g278 408 ProSiteProfiles LysM domain profile. 99 146 IPR018392 -
Vvi18g278 408 MobiDBLite consensus disorder prediction 336 355 - -
Vvi18g278 408 Gene3D LysM domain 95 156 IPR036779 -
Vvi18g278 408 SUPERFAMILY LysM domain 99 148 IPR036779 -
Vvi18g278 408 Gene3D LysM domain 158 217 IPR036779 -
Vvi18g278 408 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 20 393 - -
Vvi18g278 408 Pfam LysM domain 101 147 IPR018392 -
Vvi18g278 408 Pfam LysM domain 167 209 IPR018392 -
Vvi18g278 408 CDD LysM 99 146 IPR018392 -
Vvi18g278 408 ProSiteProfiles LysM domain profile. 165 208 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g278 - - - vvi:100253893 777.704
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g278 . . . . . . . . Cmo04g02467 Cmo15g00697 . . . . Sed03g0791 . . Bhi04g01920 Tan11g1285 Cmetu03g0754 . Hepe02g2277 . Lcy10g1221 Cla08g00584 Cam08g0999 Cec08g0588 Cco08g0698 Clacu08g0708 . Cre08g0519 Cone4ag1398 Cone7ag1539 . . . . . Cme03g00571 . Blo18g00186 . Bda01g01423 Bpe02g01637 . Bma01g00824 . . . . . . Car04g02284 Car15g00629 Cpe01g02046 . . . . . . . . . . . . . . . Lsi08g00430 . Chy03g00813 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi3g237 . 16 313 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 51.3 1.3e-78 290.4
Vvi18g278 . 20 381 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.4 1.9e-153 539.3
Vvi18g278 . 20 381 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 63.7 6.5e-133 471.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37