Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g279 ATGGCTCCTCCTCCTTACCCCTTACCTTCACTTCCATTTCTACTACTCATCCTCACCGTTCTTGGTCTTCCACGGTCATCATCTACGTTGATGCCAGGCTTCCGTCGCCAGCAACTGGAAACCGGGTTCCAGGTCGGCCTAAGACATATTGATGCTGGTCGTAACTTCACGAGACTTCAACTCATCCAAAGAGGAATCAACCGCGGGAGGCAGCGGCTGCAGAGGATGAGTGGAATGGCAACAACTGCAGAGCGTAACGGTTTCCAAGCCCCGGTTCATGTTGGAGATGGAGAGTTCGTAGTGAACTTAATGATCGGAACACCCCCTGTGCCTTTCCCGGCGATAATGGATACGGGAAGCGACTTGATATGGACGCATAAATTATGCAAGGGTGTAAAGCCTTCCAAGTTTTCAATCCCTCGTATCGGGTTCGGGTGTGGGGTTAACAACCGGGCTACAGGGATGGATCAGACTGCAGGGCTGCTGGGTCTCGGGCGGGGAGTTCTGTCGCTAGTTTCACAGCTTGGTACACAGAAATTCTCGTATTGTTTAACCTCGATTCATGAGAATAAAACGAGCAGTCTTTTGTTTGGATCTCTAGCTTATTCGAACTTCAACCCTGGAAAAATTCCAAGGACCCCATTGATTCAAAACCCATTCCTGCCATCCTACTACTATCTGGCTCTTAAAGGCATCACAGTCGGCTACACTCTTTTACCCATACCCGAATTCGCATTCCAATTGGGAAAGGATGGGAGCGGCGGCATGATCCTAGATTCTGGGACAACTATAACTTATTTACAGGAGGATGCTTTTGATGTGCTAAAGAATGCCTTCATCTCCCAAACGGAGCTTCAGGTTGCCAATTCCAGCACCACCGGACTTGACCTTTGCTTTCATTTGCCAGTGAAAAATGCAGCAGAGGTCAAGGTGCCAAAGCTGATCTTTCACTTCAAGGGGTTAGATTTAGCGCTGCCAGTGGAGAATTATATGGTATCAGATCCTGAAATGGGATTGATATGCTTGGCCATTGATGCCACGGGCAGTCTATCAATTTTTGGGAACATTCAGCAGCAGAACATGTTGGTCCTCCATGATCTTAAGAAGTCGACTTTATCCTTAGTTCCCACCCAATGTGATAAGGTGTAA 1149 47.95 MAPPPYPLPSLPFLLLILTVLGLPRSSSTLMPGFRRQQLETGFQVGLRHIDAGRNFTRLQLIQRGINRGRQRLQRMSGMATTAERNGFQAPVHVGDGEFVVNLMIGTPPVPFPAIMDTGSDLIWTHKLCKGVKPSKFSIPRIGFGCGVNNRATGMDQTAGLLGLGRGVLSLVSQLGTQKFSYCLTSIHENKTSSLLFGSLAYSNFNPGKIPRTPLIQNPFLPSYYYLALKGITVGYTLLPIPEFAFQLGKDGSGGMILDSGTTITYLQEDAFDVLKNAFISQTELQVANSSTTGLDLCFHLPVKNAAEVKVPKLIFHFKGLDLALPVENYMVSDPEMGLICLAIDATGSLSIFGNIQQQNMLVLHDLKKSTLSLVPTQCDKV* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3102028 3103369 - Vvi18g279 Vvi18g279 779982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g279 382 ProSiteProfiles Peptidase family A1 domain profile. 26 375 IPR033121 -
Vvi18g279 382 PANTHER OS08G0469000 PROTEIN 137 381 - -
Vvi18g279 382 PANTHER OS08G0469000 PROTEIN 27 126 - -
Vvi18g279 382 CDD pepsin_A_like_plant 98 379 IPR034161 -
Vvi18g279 382 Gene3D Acid Proteases 198 382 IPR021109 -
Vvi18g279 382 Gene3D Acid Proteases 134 197 IPR021109 -
Vvi18g279 382 PANTHER OS07G0603500 PROTEIN-RELATED 27 126 - -
Vvi18g279 382 PANTHER OS07G0603500 PROTEIN-RELATED 137 381 - -
Vvi18g279 382 Pfam Xylanase inhibitor C-terminal 225 373 IPR032799 -
Vvi18g279 382 SUPERFAMILY Acid proteases 92 380 IPR021109 -
Vvi18g279 382 Pfam Xylanase inhibitor N-terminal 135 199 IPR032861 -
Vvi18g279 382 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Vvi18g279 382 PRINTS Pepsin (A1) aspartic protease family signature 256 267 IPR001461 GO:0004190|GO:0006508
Vvi18g279 382 Gene3D Acid Proteases 78 133 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g279 - - - vvi:104882467 683.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1284 Vvi18g279 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g279 . . . . . . . . . . . . . . . . . Bhi04g01921 . . . Hepe02g2278 . Lcy10g1220 Cla08g01171 Cam08g1635 Cec08g1208 Cco08g1331 Clacu08g1331 . Cre08g1117 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01032 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002918 1 2 1 2 1 2 1 2 2 2 2 2 1 1 2 2 2 2 1 2 1 2 2 2 5 2 1 1 2 1 52