Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g28 ATGGCCTCCACAAACGCATCTGTTGTCTTCTCCGGAAGCAAAGCAGTCACATCCCATGAAGAAGAACATCCAGTGAAGGCCTTTGGGTGGGCAGCTAGAGACAACTCTGGCCATCTCTCTCCCTTCAACTTCTCCAGAAGGTCCACAGGAGAGGAGGACGTGAGACTTAAAGTGCTCTACTGTGGTATATGTCACACTGATCTTCACAACAGCAAGAACGAATGGGGCTCCGCCAGTTACCCTCTTGTGCCAGGGCACGAGGTCGTAGGAACTGTGACAGAAGTTGGAAGCAAGGTGAAGAAATTCAAAGTTGGAGATAAAGTAGGCGTGGGGTCCTTGGTTGGAGCATGCCACTCCTGCGACGACTGCTCTCATGACCTCGAGAACTACTGCCCCAAATTGATACTAACGTATGGTTCTCTGTACCATGATGGAACCATGACATATGGCGGTTACTCCGACACCATGGTGGCCAATGAGCGCTATGTGATTCGTATCCCCGATAACATGCCGCTTGACAAGGGAGCACCGCTCCTGTGTGCGGGGATCACAGTCTATAGTCCCTTAAAATATTATGGACTCAATGAACCAGGTATGCACATCGGGATAGTTGGGCTAGGTGGGCTTGGTCATATCGCTGTCAAATTTGCCAAGGCTTTTGGATGTAAAGTCACGGTAATTAGCACATCCCCTGCAAAGAAGAAAGAAGCCATTGAACATCTTGGTGCAGACATGTTTCTGGTCAGCCGTGATGAACAACAAATGCAGGGTGCAATGGGCACAATGGATGGTATAATTGACACGGTCTCTGCAATTCATCCTCTCCTTCCGTTGATCGACCTTTTGAAGTCCCAAGGAAAGCTTGTTATGTTGGGGGCACCAGATCAGCCACTTGAGCTTCCCGCCTTTCCTTTAATTTTGGGAAGGAAGAGTGTGGGTGGTAGTCTCACCGGAGGATTGAAGGAGACGCAAGAGATGATTGATTTTGCTGCAAAACACGATATAAAGTCGGATATTGAGGTAATTTCCATGGACTACATCAACACTGCAATGGAGCGTCTTGCCAAGGGTGATGTCAGATACCGGTTTGTCATCGACATTGGAAATACCCTTGCTGCTTCCAACCCTTAA 1131 48.54 MASTNASVVFSGSKAVTSHEEEHPVKAFGWAARDNSGHLSPFNFSRRSTGEEDVRLKVLYCGICHTDLHNSKNEWGSASYPLVPGHEVVGTVTEVGSKVKKFKVGDKVGVGSLVGACHSCDDCSHDLENYCPKLILTYGSLYHDGTMTYGGYSDTMVANERYVIRIPDNMPLDKGAPLLCAGITVYSPLKYYGLNEPGMHIGIVGLGGLGHIAVKFAKAFGCKVTVISTSPAKKKEAIEHLGADMFLVSRDEQQMQGAMGTMDGIIDTVSAIHPLLPLIDLLKSQGKLVMLGAPDQPLELPAFPLILGRKSVGGSLTGGLKETQEMIDFAAKHDIKSDIEVISMDYINTAMERLAKGDVRYRFVIDIGNTLAASNP* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 393143 395658 + Vvi18g28 Vvi18g28 779731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g28 376 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 17 374 - -
Vvi18g28 376 PANTHER ALDEHYDE REDUCTASE 17 374 - -
Vvi18g28 376 Gene3D - 30 367 - -
Vvi18g28 376 CDD CAD1 28 366 - -
Vvi18g28 376 Pfam Alcohol dehydrogenase GroES-like domain 52 165 IPR013154 -
Vvi18g28 376 SMART PKS_ER_names_mod 37 365 IPR020843 GO:0016491
Vvi18g28 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 336 IPR036291 -
Vvi18g28 376 Gene3D - 181 337 - -
Vvi18g28 376 Pfam Zinc-binding dehydrogenase 208 331 IPR013149 -
Vvi18g28 376 SUPERFAMILY GroES-like 33 198 IPR011032 -
Vvi18g28 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 85 99 IPR002328 GO:0008270|GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g28 - K23232 vvi:100261642 719.924