Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g283 ATGGTTTTATGGGTATTCGGGTATGGGTCACTGATATGGAAAGCAGGGTTTGAATATGATGATCGACGAGTTTGTTTCATCAAAGGGTACCGTCGTGTCTTCTACCAAGGTAGTACAGACCACAGAGGGACACCAGAATACCCAGGAAGAACAGTTACATTGGAGCCTGCTGAAGGAGAGATCTGCTGGGGAGTTGCCTACAAGGTTTCCAAGGAGGAAGATGAACAGATTGCATTAACATATCTAGAAGTGAGGGAGAAACAGTATGACAAGAAGGCTTATCTTGATGTTTATGCTGAGCCAATGGCTACTACTCCTGTCATCTCTGGAGTAATGGTATACATAGCATCCCCAGACAAGAAACTTAATCGTAACTACCTTGGCCCTGCATCAGTTGAAGAGATTGCCAAACAAATTATTCATGCTGAAGGCCCCTCAGGTCCTAACAGAGAATATCTTTTCCAACTTGAACAAGCACTCCTTCAAATGGGATGTGAAGACAAACATGTAATGGATCTCGCGAATGAAGTGAGGCGCATCCTTTCAGAGAAGGAGCTGACTGTTTCATGA 570 44.04 MVLWVFGYGSLIWKAGFEYDDRRVCFIKGYRRVFYQGSTDHRGTPEYPGRTVTLEPAEGEICWGVAYKVSKEEDEQIALTYLEVREKQYDKKAYLDVYAEPMATTPVISGVMVYIASPDKKLNRNYLGPASVEEIAKQIIHAEGPSGPNREYLFQLEQALLQMGCEDKHVMDLANEVRRILSEKELTVS* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3170426 3174977 - Vvi18g283 Vvi18g283 779986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g283 189 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 2 186 IPR006840 GO:0003839|GO:0006751
Vvi18g283 189 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 2 93 IPR036568 -
Vvi18g283 189 Gene3D - 2 187 - -
Vvi18g283 189 Pfam ChaC-like protein 3 179 IPR006840 GO:0003839|GO:0006751
Vvi18g283 189 CDD GGCT_like 5 116 IPR013024 -
Vvi18g283 189 PANTHER GLUTATHIONE-SPECIFIC GAMMA-GLUTAMYLCYCLOTRANSFERASE 1 2 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g283 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - vvi:100264430 388.652
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g283 . . . . . . . . Cmo04g02465 . . . . . . . . Bhi04g01928 Tan11g1292 . . Hepe02g2283 . . Cla08g00579 Cam08g0994 Cec08g0583 Cco08g0693 Clacu08g0703 . Cre08g0514 Cone4ag1396 Cone7ag1541 . . . . . Cme03g00573 . . . Bda13g01484 . Bpe14g00379 . Bma02g00221 . . . . . Car04g02282 . Cpe01g02044 . . . . . . . . . . . . . . . Lsi08g00423 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008545 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35