Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g288 ATGCCGAAGAACAAGGCGGATGATGAGAAGCGGGAGCTTGTCTTTAAAGAAGACGGCCAAGAATACGCCCAGGTCTGGATCGCCGCAGGTGATATTATCCTCGTCGGTCTCCGTGACTACCAGGATGACAAGGCTGACGTCATCCTCAAGTACATGCCCGACGAGGCTCGCCTTCTGAAGGCCTACGGCGAGCTTCCGGAGAACACTAGGCTCAATGAGGCGTGTGAGAGCTCAACAATGGCGGAGAGTGGGATAATGCTGTTGGCGGCCACCATGATCATGATATGGTGGGCGACGCCATCACAAGCCATATGGTTGAGCCTTCCAAGCTCTGGAACCAAGTGCGTCTCTGAAGAAATCCACAACAACGTCGTCGTTTTGCTCGATTACTCTCTTGTCCTAGGCGGAGACGACGACCCCAGCCATCCCACCACCATCTCCGTTAGGGTATCATCCCCATATGGAACTATTGACATTGACTGGAAAATTGGAATTACTGCAAAGGATTGGGACTCAGTTGCTAAAAAAGAGAAAATTGAGGGTGTTGAATTTGAGCTGAGGAAACTTGAAGGAATAGTGAATGCCATCCATGAGAATATAATCTTTCTCAAGGAGAGGGAAGCAAAGATGAGGGAAGTCAGCGAAACAACGAACTCCAGAGTAGCATGGTTCAGTCTCATGTCTCTTGGTGTCTGCATTGTGGTTGCAGCTTTGCAGTTATGGCACTTGCAGCACTTCTTCAGAAAGAAGAAGCTTATTTAG 762 49.21 MPKNKADDEKRELVFKEDGQEYAQVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEACESSTMAESGIMLLAATMIMIWWATPSQAIWLSLPSSGTKCVSEEIHNNVVVLLDYSLVLGGDDDPSHPTTISVRVSSPYGTIDIDWKIGITAKDWDSVAKKEKIEGVEFELRKLEGIVNAIHENIIFLKEREAKMREVSETTNSRVAWFSLMSLGVCIVVAALQLWHLQHFFRKKKLI* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3198720 3206947 - Vvi18g288 Vvi18g288 779991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g288 253 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 81 155 - -
Vvi18g288 253 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 156 253 - -
Vvi18g288 253 SUPERFAMILY Nucleic acid-binding proteins 3 76 IPR012340 -
Vvi18g288 253 Pfam emp24/gp25L/p24 family/GOLD 155 248 IPR009038 -
Vvi18g288 253 ProSiteProfiles S1 domain IF1 type profile. 19 52 IPR006196 GO:0003723|GO:0003743|GO:0006413
Vvi18g288 253 SMART EMP24_GP25L_2 103 248 IPR009038 -
Vvi18g288 253 Gene3D - 24 87 IPR012340 -
Vvi18g288 253 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 156 253 IPR015720 -
Vvi18g288 253 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 81 155 IPR015720 -
Vvi18g288 253 SMART eIF1neu4 15 66 IPR001253 GO:0003743|GO:0006413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g288 K20352 TMED10, ERV25; p24 family protein delta-1 - han:110936462 218.394
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g288 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00143 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002158 2 4 1 1 2 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 1 2 2 2 2 4 2 2 64