Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g291 ATGTCTTTGAGCCCTCCTCGTGAAAGGAATAATGGCGACAGAACCTACCAGTTTTACTGGTGTTATCAGTGCAATAGGTCGGTCAGGATTGCGTCCGACAACCCGTCACAGATTATCTGTCCTCGCTGTCTGGGTCAGTTTCTACAAGAAATTGATACAACCAGGCCTAGGGCTTTCAATGAGATTATCACTTGGGATCCATTCCCAGAAGCCCCGGCTAGAAACAGAGGCAGGAGATGGCTGAGGAGGCGAAGCCACTCCAGAGAACATTGGGAGGCGGAAGCTGATACTGGAGTCCCTGGACGGCGGCGAAATAATGAATTGGGAGGGAGACTGGGGTGGCCCTTTGGTAATGGGTTGGGAGCTCAGGGTAGGACTTGGATTGTCCTGAGGCCCACCGGTCCTCCTGGCCAAAATGGACCCTTTCCCCAGTCAGAAAACATGAGACCGCCAAGGTTTGAGCTCAGGGATTTCTTCTCTGGACCAGGGCTAAATGAATTGATCGAAGAACTCACCCAAAATGACAGACCGGGTCCTCCTCCTGCTCCTGATTCCGCCATCAATGCAATGCCCACCGTGAAAATTACGCCCACGCATTTGATTAACGATTCGCATTGCCCCGTTTGCAAAGAGGAGTTTAAGGTTGGTGAGGAAGTGAGAGAGTTGCCCTGCAACCATGTTTATCATTCAGACTGTATCGTTCCATGGCTGCAGCTTCACAATTCATGTCCAGTTTGCCGGCATGAGGTTCCGGTTCCTTCTGATGAGTCTGATGAGAGTCATGAGGGAGAGGATCGGCGGGTGCGGTGCATGAGGTTGAGACAGTTAGCGTCTTTGTGGCCCTTCCGTTCTAGGTACCGCCGAATTAATCCCCAGGATCGTGACGTTACTCCTCACAGAGGTGAGTCTTGA 912 51.75 MSLSPPRERNNGDRTYQFYWCYQCNRSVRIASDNPSQIICPRCLGQFLQEIDTTRPRAFNEIITWDPFPEAPARNRGRRWLRRRSHSREHWEAEADTGVPGRRRNNELGGRLGWPFGNGLGAQGRTWIVLRPTGPPGQNGPFPQSENMRPPRFELRDFFSGPGLNELIEELTQNDRPGPPPAPDSAINAMPTVKITPTHLINDSHCPVCKEEFKVGEEVRELPCNHVYHSDCIVPWLQLHNSCPVCRHEVPVPSDESDESHEGEDRRVRCMRLRQLASLWPFRSRYRRINPQDRDVTPHRGES* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3233802 3234804 - Vvi18g291 Vvi18g291 779994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g291 303 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Vvi18g291 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 253 IPR013083 -
Vvi18g291 303 PANTHER - 145 260 - -
Vvi18g291 303 PANTHER - 9 104 - -
Vvi18g291 303 Pfam Ring finger domain 205 247 IPR001841 -
Vvi18g291 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 145 260 - -
Vvi18g291 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 104 - -
Vvi18g291 303 CDD RING-H2_RNF126_like 206 247 - -
Vvi18g291 303 SMART ring_2 206 246 IPR001841 -
Vvi18g291 303 Pfam zinc-ribbon 17 51 IPR039525 GO:0061630
Vvi18g291 303 SUPERFAMILY RING/U-box 186 253 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g291 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - vvi:100262515 595.504
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35