Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g292 ATGGAAATCCTGCGGCTCAGATTGAAACTATGTGGCTCTCCCACACAACGCCTTAGTTATAATAATAAAAACCCGGTTCGCTTCTCCATTTATCTTTCTCGAAATCCTCTGTGTATTTTCTCTCTCTCTCTACTTTCTAAAATACCCACCTCGGAAAACCTCCTATTAGCTCTGATTTTTGTTGCAATCGCGCTTTTTTTCGCCGGAAAAAACAAGGGTTTTCTTCACCACACAATCTCGATTCTCAAACATTCCTGGGACTGTAATGTTAGGAAGCTCGGGTTCTCGAAGAGTAATGCGAAGCCAGTACAGTGGTTTATCGGTGAATCGACGACGAACAAGGTGCAAAAGGCAAAGAGAATTGTGCGAGAAGGCGTGGAGTTTTACAGTAATGGTGATTTCTACGAAGGGGAGTTTCACAAAGGAAGGTGCAACGGAAGTGGGGTTTACAATTACATTGTGAATGGGAGGTATGAAGGTGATTGGATTGATGGGAGGTATGATGGGTATGGGATTGAGAGTTGGGCGCGAGGGAGTCGATATAGGGGGCAGTATCGGCAGGGTTTAAGGCATGGTTATGGGGTTTATAGGTTCTACACAGGGGATTCGTATGCCGGGGAGTGGGTAAATGGGCAGAGTCATGGTATTGGGGTTCAGACTTGTTCGGATGGAAGCTGTTATGTTGGAGAGTTCAAGTGTGGCGTCAAGCACGGCCTTGGGTGCTACCATTTTAGAAATGGAGATAGGTACGCGGGGGAATATTTTGGTGACAAAATACATGGATTTGGTGTCTACCACTTTGCTAATGGCCACTGCTACGAAGGGTCATGGCATGAAGGTCGTAAGCAAGGCTATGGTATGTATAGTTTCCGGAATGGTGACACCAGATGTGGGGAATGGGACTCTGGCACCCTTAAGAACCCTCTACCTCCACTAACTGATGCAGTCCTTCGGGCGGTTCAGGCTGCCAGAAGAACGGCAGAGAATGCAATTCATGTTCCCCGGGTGGATGAACAAGTGAACAAGGCAGTCACGGCTGCAAACAGAGCTGCAACTGCCGCTAGAGTTGCTGCTGTCAAAGCTGTTCAGAACAGGATGGACGGAAAGTTTTGCGAGACTACAGACGTCTAA 1131 47.3 MEILRLRLKLCGSPTQRLSYNNKNPVRFSIYLSRNPLCIFSLSLLSKIPTSENLLLALIFVAIALFFAGKNKGFLHHTISILKHSWDCNVRKLGFSKSNAKPVQWFIGESTTNKVQKAKRIVREGVEFYSNGDFYEGEFHKGRCNGSGVYNYIVNGRYEGDWIDGRYDGYGIESWARGSRYRGQYRQGLRHGYGVYRFYTGDSYAGEWVNGQSHGIGVQTCSDGSCYVGEFKCGVKHGLGCYHFRNGDRYAGEYFGDKIHGFGVYHFANGHCYEGSWHEGRKQGYGMYSFRNGDTRCGEWDSGTLKNPLPPLTDAVLRAVQAARRTAENAIHVPRVDEQVNKAVTAANRAATAARVAAVKAVQNRMDGKFCETTDV* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3244466 3247061 - Vvi18g292 Vvi18g292 779995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g292 376 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 33 369 - -
Vvi18g292 376 Pfam MORN repeat 158 180 IPR003409 -
Vvi18g292 376 Pfam MORN repeat 181 202 IPR003409 -
Vvi18g292 376 Pfam MORN repeat 273 295 IPR003409 -
Vvi18g292 376 Pfam MORN repeat 204 225 IPR003409 -
Vvi18g292 376 Pfam MORN repeat 250 271 IPR003409 -
Vvi18g292 376 Pfam MORN repeat 135 152 IPR003409 -
Vvi18g292 376 Pfam MORN repeat 227 249 IPR003409 -
Vvi18g292 376 SMART morn 156 177 IPR003409 -
Vvi18g292 376 SMART morn 271 292 IPR003409 -
Vvi18g292 376 SMART morn 179 200 IPR003409 -
Vvi18g292 376 SMART morn 133 154 IPR003409 -
Vvi18g292 376 SMART morn 202 223 IPR003409 -
Vvi18g292 376 SMART morn 248 269 IPR003409 -
Vvi18g292 376 SMART morn 225 246 IPR003409 -
Vvi18g292 376 Gene3D - 210 255 - -
Vvi18g292 376 Gene3D - 165 209 - -
Vvi18g292 376 Gene3D - 120 164 - -
Vvi18g292 376 Gene3D - 256 315 - -
Vvi18g292 376 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 176 303 - -
Vvi18g292 376 PANTHER RADIAL SPOKE HEAD 10 HOMOLOG B-LIKE 33 369 - -
Vvi18g292 376 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 125 202 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g292 - - - vvi:100245359 650.973
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68