Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g297 ATGAGAGGAGTGGTTGAGCAATCTGTTGTTGAGAGGTGTGAAGACGGGGATAAGGAGAAGAAGAAAAGGCGTCGACCTCGGCGCTCTAAACAGAACGCTTCTGCTTCAGCAACATGTAGTTCAGCAAATGAAATGCGTGGGGAAGTATCAGAATGCTTGGCAAATGGTAGCATATCAAATTATGATACCACATCAATGAGTTATTCCTCATCAAAGCAGGGTGGGTTGGAGACTGATCCTTTAGACAACCATGGCTTGCACAAAGCATCTGATGTCGCTTTCACTTCTCTGCCAACAATGCATTTGAATGAACAAGCACTCCACGCGGAGGTTGGAAGCATGAACAATCAGCATATATTTCCTTCTGATCCTAGTGGAGGAATGTGTTCTAAATCTTGTCCTGTGCCCATCGATTGTGAACAGTCAATTCAGTCATTTACAAACAAAAATGTCCTTTCTCCCTATCAGGATGAGGGTTGTGCTCAGAGAAAATATTTTACTCCACACTGGTCTACTGAGGTTGTTAACGAGGCTTTAGAGAAAGGCAATGTCTTCAGAGCATCGTTTCGTGTGAATGCATACAATAGACTCGAGGCCTACTGCACAATAGAGGGAGTGAAAACAGATGTTCTCATTAGTGGACTTGCTTCTCAGAATAGAGCTGTAGAAGGAGACATTGTAGCAGTTAAAGTTGATCCTTTCTCATTATGGAGCCGGATGAAAGGGTCAACTGTGTTTCCTAACAATGCTGCGGAGAATATTTCCCAAGAACCAATGGGCCATAATCATGTTAATGGACATCACCCCCCTGTCTTTGGTCCTTCACATGTAAGTTGTTTTGGTGAGCGAAGCAACATGGACTCATTGGAGAAGATTTGTGCTGCAATTAATTCATTCCCATCAAAACGACCAACTGGCAGTGTTGTAGCCATCATTGAGAGGTCTCCTCGTCGGGTTGCTGTTGTTGGTTTTCTTAGTGTTAAGCAGTGGCTTTCTAGCCGTGTACTTCACAGAAAGGGCACTAAAATGAACAAAACTTATTTGTCACTGTCTGATAGTGAGTACATCCAGTTGACACCAACTGACCCTAAATTTCCAAAGATGGTGGTACCTGTGAAAGGCTTGTCTGACTGCATCAAGAAACGATTGGAAGATGGTGATGCATCAATGGAAATGGAGCTTGTAGCCGCACAAATCAGTGATTGGGGGGAGGAAAGTTCTCTTCCCCTAGCTCATGTCATGCATATTTTTGGGCGAGGTGGGGAAATAGAACCAAGAATTGCTGCAATTTTATTCGAAAATGCAATTCGTCCTTCTGAATTTTCCCCTGAATCTCTTTCCTGCCTTCCACATATTCCTTGGAAGGTGCCACAGGAGGAAATTGAGAGAAGAAGAGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCTACTGCCACTGATCTTGATGATGCTCTATCAGTTGAAAAGTTATCTGGTGGCAATTTCAGAGTGGGGGTCCATATTGCTGATGCATCATATTTTGTTCTACCCGACGGAGTCTTAGACAGAGAAGCACAATCTCGATCTACAAGTGTCTATTTGCTGCAGCATAAGTTGCCAATGTTGCCACCATTGCTTTCTGAGAATTTGGGTTCACTTATTCCTGGAGTGGATAGACTTGCCTTTTCCATTTTCTGGGATATTAATCTTGCTGGGGATGTTGTAGATCGTTGGATTGGCCGTACTGTGATACAATCTTGTTGCAAGCTTTCATATGAACATGCACAGGGCATTATTGATGGAATGTTTGATGTGGAGGTGATAAGATCTATTAAATATCTTTATGCAATTTCCAAAACTTTGAGGGCCAACAGGTTTAATGATGGCGCGCTATTGCTGGATGGCGCCAAAGTTATTCTCTTGTTTGATGAACATGGAACAGCTGCAGAAATCATATCTAGAGCTTTTCCTGATAATGCATTATTGAGAAGGCACCCTGAGCCTAATTTGCGAAAGCTTAGGGAGTTTGAAGCATTTTGTAGTAAGCATGGTTTAGAATTGGACACCTCTTCTTCTGGTCAGTTCAATCATTCGCTGGAGCAAATTAGGGAAAAGCTCAAAAATGACTCTGTGTTGTTTGATATTCTCCTTTCATATGCTTCGAGGCCAATGCAATTGGCAACATACTTTTGCAGTGGTGACTTAAAAGACAACAAAAACGAGTGGTCTCATTATGCCCTGGCTGTTCCTCTTTACACCCATTTTACATCCCCACTGCGTCGATATCCTGATATCATAGTACATCGGACATTGGCTGCAGCTATAGAAGCTGAGGAATTATATCTGAAGCATGGGGCAAAAATACAAAAGGTGAAGAATGGGGAGGAAATGAGAAGATGTTTCACTGGTATTCACTTTGATAAGAATGCTGCAGAATCTGTAGAAGGTCAGAAGGCACTATCAGTTGCAGCATCAAAGCACCGGCTTCCATGCACAGAAATACTTGCAGATGTTGTTGCTTATTGCAATGAGAGAAAGCTGGCTAGTAGGCATGCTAAGGATGGCTGTGAGAGACTCTATATGTGGGTTCTGCTGAAGAAGAAAGAGGTTTTATTGTCGGAAGCTAGAGTTTTGGGTCTGGGTCCAAGATTCATGTCCATTTATATTCATAAGCTTGGTATTGAGCGACGCATTTACTATGATGAAGTCGAAGGCTTGACAGTAGAATGGCTTGATGCTACATCCACATTGGTAGTCAATTTATCCACAAATAAATGTTCTCGTTGGAGGGGGAATCAAGGTAAGTACAGGCAACTTGAAGATGTTGCATGGGTTATTCGTCCATGCAACTTGAAGCAGGAGGTGGATGCGTGCATGTCTGAATCTGGTGTTCCAGATGCTAATGAAATTGACCCTTTATTTTTTCCTCTCACAGTTCGCACCCTTTCAACAATTCCAGTAGTTCTTCATGCTGTTGGCGGTGATGATGGACCTCTTGATATAGGGGCAAGGCTGTACATGAACTCATATTATGGTTGA 3024 42.49 MRGVVEQSVVERCEDGDKEKKKRRRPRRSKQNASASATCSSANEMRGEVSECLANGSISNYDTTSMSYSSSKQGGLETDPLDNHGLHKASDVAFTSLPTMHLNEQALHAEVGSMNNQHIFPSDPSGGMCSKSCPVPIDCEQSIQSFTNKNVLSPYQDEGCAQRKYFTPHWSTEVVNEALEKGNVFRASFRVNAYNRLEAYCTIEGVKTDVLISGLASQNRAVEGDIVAVKVDPFSLWSRMKGSTVFPNNAAENISQEPMGHNHVNGHHPPVFGPSHVSCFGERSNMDSLEKICAAINSFPSKRPTGSVVAIIERSPRRVAVVGFLSVKQWLSSRVLHRKGTKMNKTYLSLSDSEYIQLTPTDPKFPKMVVPVKGLSDCIKKRLEDGDASMEMELVAAQISDWGEESSLPLAHVMHIFGRGGEIEPRIAAILFENAIRPSEFSPESLSCLPHIPWKVPQEEIERRRDLRNLCIFTIDPSTATDLDDALSVEKLSGGNFRVGVHIADASYFVLPDGVLDREAQSRSTSVYLLQHKLPMLPPLLSENLGSLIPGVDRLAFSIFWDINLAGDVVDRWIGRTVIQSCCKLSYEHAQGIIDGMFDVEVIRSIKYLYAISKTLRANRFNDGALLLDGAKVILLFDEHGTAAEIISRAFPDNALLRRHPEPNLRKLREFEAFCSKHGLELDTSSSGQFNHSLEQIREKLKNDSVLFDILLSYASRPMQLATYFCSGDLKDNKNEWSHYALAVPLYTHFTSPLRRYPDIIVHRTLAAAIEAEELYLKHGAKIQKVKNGEEMRRCFTGIHFDKNAAESVEGQKALSVAASKHRLPCTEILADVVAYCNERKLASRHAKDGCERLYMWVLLKKKEVLLSEARVLGLGPRFMSIYIHKLGIERRIYYDEVEGLTVEWLDATSTLVVNLSTNKCSRWRGNQGKYRQLEDVAWVIRPCNLKQEVDACMSESGVPDANEIDPLFFPLTVRTLSTIPVVLHAVGGDDGPLDIGARLYMNSYYG* 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3282680 3291682 - Vvi18g297 Vvi18g297 780000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g297 1007 Pfam Dis3-like cold-shock domain 2 (CSD2) 355 434 IPR041505 -
Vvi18g297 1007 PANTHER DIS3-LIKE EXONUCLEASE 2 50 1005 - -
Vvi18g297 1007 SUPERFAMILY Nucleic acid-binding proteins 163 314 IPR012340 -
Vvi18g297 1007 SUPERFAMILY Nucleic acid-binding proteins 305 436 IPR012340 -
Vvi18g297 1007 Pfam RNB domain 464 770 IPR001900 GO:0003723|GO:0004540
Vvi18g297 1007 MobiDBLite consensus disorder prediction 1 42 - -
Vvi18g297 1007 Gene3D - 340 422 - -
Vvi18g297 1007 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 982 IPR028591 GO:0000175|GO:0034427
Vvi18g297 1007 SMART RNB_2 464 772 IPR001900 GO:0003723|GO:0004540
Vvi18g297 1007 PANTHER RIBONUCLEASE 50 1005 - -
Vvi18g297 1007 MobiDBLite consensus disorder prediction 7 21 - -
Vvi18g297 1007 SUPERFAMILY Nucleic acid-binding proteins 426 862 IPR012340 -
Vvi18g297 1007 Pfam Rrp44-like cold shock domain 166 239 IPR033771 -
Vvi18g297 1007 Gene3D - 156 261 - -
Vvi18g297 1007 ProSitePatterns Ribonuclease II family signature. 739 763 IPR022966 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g297 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - vvi:100260740 1918.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1129 Vvi18g297 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43