Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g3 ATGGTGAAGGAGACAGAATACTATGACGTCCTGGGAATCAGCCCCTCGGCGACCGAGGCAGAGATTAAGAAAGCTTATTACATCAAGGCACGGCAGGTCCATCCAGATAAAAACCCCAATGATCCTCTTGCTGCACAAAATTTTCAGGTTTTGGGGGAGGCTTACCAAGTATTGAGTGATCCATCCCAGCGGCAGGCTTATGATGCTCATGGGAAGTCAGGAATTTCAACAGATTCCATTATTGAACCTGCAGCAATATTTGCAATGCTTTTCGGTAGTGAGCTTTTTGAGGAATACATAGGCCAGCTTGCAATGGCCTCAATGGCTTCACTGGACATTTTTACAGAAGGCGAACAGTTTGATGCTAAAAAGTTGCAAGAAAAAATGAGGGTTGTTCAAAAAGAAAGAGAAGAAAAACTTGCTGACATACTGAAGGACCGATTAAACCAATATGTTCAAGGGAACAAAGAGGATTTTGTTAATCATGCTGAAGCTGAATTATCAAGGCTCTCAAATGCAGCTTATGGTGTTGATATGTTGAATACAATTGGCTATATATATGCAAGACAGGCGGCTAAAGAGCTTGGGAAGAAGGCGATATATTTGGGTGTGCCGTTCATTGCTGAGTGGTTCAGAAACAAAGGCCACTTCATAAAATCCCAAGTAACTGCAGCAACTGGTGCTATTGCTTTGATTCAACTGCAAGAGGACATGAAGAAGCAGCTGAGTGCAGAAGGAAACTATACGGAGGAAGAGCTTGAAGAATACATGCAATCTCACAAAAAGCTAATGATTGATTCTCTGTGGAAGCTTAATGTAGCTGATATTGAAGCTACTCTTTCTCGTGTTTGTCAGATGGTTCTTCAAGATAACAATTGCAAGAAAGAGGAGCTTCGTGCACGGGCAAAGGGATTGAAGACTCTGGGAAAAATTTTCCAGAGGGTTAAATCATCCAATGGGAATGAGGATGAAGCTATGCTAAACAGTGCAGTCCATAAACTGAATGGAAGTGAACCAAGCCATGATGCTTGTTCTCCTAGTACCTCACCAAAATCTTCAAACCTTGAGGAGCAGTCTTATACTGCATTTGCATCACAGTTCCAGAGCCCGTATGTGGAGGCTCCCCAATTTGCAGGTGCTCAGTATAACTACAGTAATTTTCCAATGCCGACAGCTCCGCCTGGTGCCCAGAGAGATTCTTCAACAGGCAGAGAGTGA 1218 43.1 MVKETEYYDVLGISPSATEAEIKKAYYIKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSDPSQRQAYDAHGKSGISTDSIIEPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEQFDAKKLQEKMRVVQKEREEKLADILKDRLNQYVQGNKEDFVNHAEAELSRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDNNCKKEELRARAKGLKTLGKIFQRVKSSNGNEDEAMLNSAVHKLNGSEPSHDACSPSTSPKSSNLEEQSYTAFASQFQSPYVEAPQFAGAQYNYSNFPMPTAPPGAQRDSSTGRE* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 70304 92437 + Vvi18g3 Vvi18g3 779706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g3 405 CDD DnaJ 6 60 IPR001623 -
Vvi18g3 405 PRINTS DnaJ domain signature 8 26 IPR001623 -
Vvi18g3 405 PRINTS DnaJ domain signature 26 41 IPR001623 -
Vvi18g3 405 PRINTS DnaJ domain signature 43 63 IPR001623 -
Vvi18g3 405 PRINTS DnaJ domain signature 63 82 IPR001623 -
Vvi18g3 405 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 376 - -
Vvi18g3 405 Coils Coil 122 142 - -
Vvi18g3 405 Pfam X-domain of DnaJ-containing 133 326 IPR026894 -
Vvi18g3 405 Pfam DnaJ domain 6 68 IPR001623 -
Vvi18g3 405 MobiDBLite consensus disorder prediction 334 359 - -
Vvi18g3 405 MobiDBLite consensus disorder prediction 340 359 - -
Vvi18g3 405 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
Vvi18g3 405 Gene3D DnaJ domain 1 84 IPR036869 -
Vvi18g3 405 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Vvi18g3 405 SMART dnaj_3 5 63 IPR001623 -
Vvi18g3 405 MobiDBLite consensus disorder prediction 382 405 - -
Vvi18g3 405 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Vvi18g3 405 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g3 - - - vvi:100259812 788.104
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g346 Vvi18g3 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58