Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g31 ATGAGCAGTCGCTTGATCCAGGGGGCGTCAATGGCGGAGCACTTGGCTTCCATCTTCGGCACCGAAAAGGACCGCGTGAACTGTCCGTTTTATTTCAAGATCGGTGCTTGTCGTCACGGAGATCGATGCTCGCGCCTCCACAATCGCCCCACGATCTCCCCAACGCTTCTCCTCTCCAACATGTATCAGCAGCTCGGCAAGTTCGGCGAGATCGAGAGTCTCAATGTTTGTGATAACCTGGCCGATCACATGATCGGGGCGGTTCTACTCCGGCCGCCCTATCATTGCGGATTTTTCTCCCTCCACGTTACCGGAGGGATTCTGATAGGCGAAGGAGCGGGGACCGGAGTGAGGAGCGCAGAGCGAGGATTGAGCTGTGGAATCGAGAAAGAGAGGAAAGGCAGTGAAGTCATTTTTCTCGTCCTTTGTTTGGGGCTGGCTCTGGCATTTTTCTTCTCTTATTGGGCCTGTCTGGGAAGCCCTGAAATCGGGTTACTGAACATGAAGTTGGTCAGAAAACGTTCCAAGCTGTCTGGTTAG 540 53.89 MSSRLIQGASMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQQLGKFGEIESLNVCDNLADHMIGAVLLRPPYHCGFFSLHVTGGILIGEGAGTGVRSAERGLSCGIEKERKGSEVIFLVLCLGLALAFFFSYWACLGSPEIGLLNMKLVRKRSKLSG* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 411860 416076 + Vvi18g31 Vvi18g31 779734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g31 179 PRINTS U2 auxiliary factor small subunit signature 28 47 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g31 179 PRINTS U2 auxiliary factor small subunit signature 47 67 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g31 179 PRINTS U2 auxiliary factor small subunit signature 79 101 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g31 179 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 64 90 - -
Vvi18g31 179 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 11 64 - -
Vvi18g31 179 ProSiteProfiles Zinc finger C3H1-type profile. 22 50 IPR000571 GO:0046872
Vvi18g31 179 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 11 64 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g31 179 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 64 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vvi18g31 179 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 24 48 IPR000571 GO:0046872
Vvi18g31 179 SMART c3hfinal6 23 49 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g31 K12836 U2AF1; splicing factor U2AF 35 kDa subunit - vvi:100266834 146.362
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g31 . . . Bda03g00337 . Bpe04g00296 Bma04g00306 . . . Cma01g02046 Cma09g00013 Car01g01612 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02431 Csa04g02745 . . Blo17g00911 . . . . . . . . Cmo01g02103 . . . . Car09g00013 . Cpe02g00010 . . . . . . . Cla11g01859 Cam11g1926 Cec11g1953 Cco11g1965 Clacu11g2091 Cmu11g1894 Cre11g2302 . . Chy07g00433 Cme07g00017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069378 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14315 PF00642 zf-CCCH 1.60E-07 CL0537 Vvi TF