Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g310 ATGCGTTACTCTGAGACTCATACCCCTCCCTTCCATGCCTCTATTCTCTATCTGACACAAACTAAAAGACAGATGGCTCCACACCTTAGCTCGCCTCTATCATTTCTGCTGATTTTGATTGTAGTTTCATCAGTGCCACAAATGTCTGAATCGGCAAGAGTGTTCACTATAACAAACGACTGTAAAGAGACAATCTGGCCGGCGGTCTTCCCGGGCGAATACTTTGATGGTGGGGGCTTTGCCCTAAAAACAGGCCAATCAAGGGTTTTCACCGCTCCACTGAGCTGGTCTGGGCGTATATGGGGTCGATCAGGTTGCAACTTTGATAAAACTGGTAAGGGAAATTGCCAAACCGGGAGCTGCGGCGACAACATCAAGTGCTCGGCCTCAGGCAAAACACCTGCAACACTCGCAGAATTCACACTTGCAGCTCTTGATTTCTACGATGTTAGCCTTGTCGATGGCTTCAACCTACCATTAGTTGTAAAACCCATTAATGGTAAAGGAAATTGCAGCATTGCTGGCTGTGACAGCAACCTAAGGGACACTTGCCCGTCCGAGCTCGCCCTTAAATCCAGTGGGAAGACTGTAGGGTGCCGGAGTGCATGCGATGTGTTCAACACTGATGAATACTGTTGTAAAGGGCTTTATGGGAACGCCGCCACATGTGTACCTACCTCCTACTCCAAGAAGTTCAAGGAGGCTTGTCCAGCCGCATATAGTTACGCTTATGATGATCCCTCCAGCATTTTTACCTGTTCCGGCACCACCGACTATGTCATCACATTCTGCGGATCAAGGCGGCAGCCAGCGTGCACCTACCACAACAACAAACTCATCTGCAGTGGATCTAAGGGCTTAAGATCTTTGATTGGAGCATGGTGGGCTGTGATGCTCACATTTCTATTAACCATATCCGTCTCTTGA 927 48.54 MRYSETHTPPFHASILYLTQTKRQMAPHLSSPLSFLLILIVVSSVPQMSESARVFTITNDCKETIWPAVFPGEYFDGGGFALKTGQSRVFTAPLSWSGRIWGRSGCNFDKTGKGNCQTGSCGDNIKCSASGKTPATLAEFTLAALDFYDVSLVDGFNLPLVVKPINGKGNCSIAGCDSNLRDTCPSELALKSSGKTVGCRSACDVFNTDEYCCKGLYGNAATCVPTSYSKKFKEACPAAYSYAYDDPSSIFTCSGTTDYVITFCGSRRQPACTYHNNKLICSGSKGLRSLIGAWWAVMLTFLLTISVS* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3387827 3389344 + Vvi18g310 Vvi18g310 780013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g310 308 PRINTS Pathogenesis-related protein signature 54 66 IPR001938 -
Vvi18g310 308 PRINTS Pathogenesis-related protein signature 78 87 IPR001938 -
Vvi18g310 308 PRINTS Pathogenesis-related protein signature 99 110 IPR001938 -
Vvi18g310 308 PRINTS Pathogenesis-related protein signature 112 141 IPR001938 -
Vvi18g310 308 PRINTS Pathogenesis-related protein signature 146 162 IPR001938 -
Vvi18g310 308 PRINTS Pathogenesis-related protein signature 255 264 IPR001938 -
Vvi18g310 308 PIRSF PR5 3 305 IPR001938 -
Vvi18g310 308 CDD TLP-PA 54 264 - -
Vvi18g310 308 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 34 278 - -
Vvi18g310 308 SMART tha2 55 265 IPR001938 -
Vvi18g310 308 ProSiteProfiles Thaumatin family profile. 52 264 IPR001938 -
Vvi18g310 308 Pfam Thaumatin family 59 264 IPR001938 -
Vvi18g310 308 PANTHER OS03G0233200 PROTEIN 34 278 IPR001938 -
Vvi18g310 308 Gene3D Thaumatin 54 264 IPR037176 -
Vvi18g310 308 SUPERFAMILY Osmotin, thaumatin-like protein 54 265 IPR037176 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g310 - - vvi:100259225 579.711