Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g311 ATGGCCGGTGGAAAGGTGTCCTTCAAGGTCACGCTCACTTCCGATCCAAAACTTCCGTTCAAAGTCTTTAGCGTTCCAGAAGCGGCTCCGTTCACCGCCGTCCTGAAATTCGCAGCTGAAGAATTCAAAGTTCCTCCTCAGACCAGCGCTATCATCACCAACGATGGTGTAGGAATCAATCCTCAACAAAGTGCAGGTAATGTTTTTCTCAAACATGGTTCTGAACTCCGCCTGATTCCCCGTGATAGAGTTGGAGCTTTTGCGACTTTGGGTGCTGCCTTAGTATCAGGGTGA 294 49.32 MAGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAFATLGAALVSG* 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3389496 3394322 + Vvi18g311 Vvi18g311 780014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g311 97 Gene3D - 3 86 - -
Vvi18g311 97 PANTHER UBIQUITIN-FOLD MODIFIER 1 3 88 - -
Vvi18g311 97 SUPERFAMILY Ubiquitin-like 3 85 IPR029071 -
Vvi18g311 97 Pfam Ubiquitin fold modifier 1 protein 5 79 IPR005375 GO:0071569
Vvi18g311 97 PANTHER UBIQUITIN-FOLD MODIFIER 1 3 88 IPR005375 GO:0071569
Vvi18g311 97 CDD Ubl_UFM1 6 80 - -
Vvi18g311 97 PIRSF Ufm1 1 87 IPR005375 GO:0071569
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g311 K12162 UFM1; ubiquitin-fold modifier 1 - vvi:100264401 191.815
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g311 . . . . . . . . Cmo04g02451 Cmo15g00714 . . . . . . . . . . . . . . . . . . . . . Cone4ag1381 Cone7ag1550 . . . . . . . Blo18g00192 . Bda01g01414 Bpe02g01627 . . . . . . . . Car04g02270 Car15g00646 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009163 1 1 0 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 33