Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g313 ATGGACTTGCATCGAATAGTGAGTGTTATACGCCAGTGTGGCCGATTCCGAGCTTTTCGACATGGAAGATCACTTCATGCTCACATAATCAAACTCGGGGTTTTCAATGACGTGTTTTTTGCCAATAATTTGTTGGCCATGTACGTTGATATCTCTCTTTTGAAAGATGCTCGAAGACTGTTTGATGAAACGCTAGAAAGAAATGTTGCTACATGGACCACAATGATCTCTGCATATTCCAGTAGTGGGAGGCCCGATACTGCTCTCAAATTCTATGTGCAGATGTTAGAGTCCAAATCAGAGACACCAAATGGGTTCCTGTACTCTGCAGTTCTAAAAGCGTGTGGTCTCGTGGGTGATCTTGAATCGGGTAAATTGATCCATGGAAGAGTTTTTAGAGCTAATTTAGGGTTTGATACTGTTTTGATGAACACCCTTTTGGATATGTATGTGAAATGTGGGAGTTTGAGTAGTGCCCGGAAAGTTTTTGATGATATTTTGTGTCCTAGTTCAACTTCGTGGAATACTATGATTTCAGGGTATGGTAAAGAAGGTTTGATGGAGGAGGCTGTGAATTTATTTTATCAAATGCCAGAACCAGATACTGTGTCTTGGAATAGCATTATTGCTGGTTTTGGCATTCTTATTGATCTCTATGCAAACGATGGGAAAATTAAAGATGCATTAAGATTGTTTTACAGGCTTCCAGAGAAAGATATTGTGGTTTGGTCCAGTTTAATCTCTTGGTGCACTAAGATGGGACTAAACTCATTGGTTTTTTCACTGTTCAGGGATATGGTTAATTTGGATATTGAAGTTGATCAGTTTATTATCTCAAGTGTTCTGAAGGCTTGTTCAAGCCTAGTAGGGCTTGGGAGTGGTAAACAGGTCCATTCCTTTTGTGTAAAGAGCGGGTATGAATCAGAGAGGATAACAGTAACATCTCTAATTGACCTGTATGCAAAATGTGGTGAAATTGAGGATGGATTAGCTTTGTTTTATTGTACTTCAGAAAGAGATACTGTGTGTTATACAGGGATCATTATGGGATGTGGGCAAAATGGGAGAGCAATGGAAGCAGTTGGGTTTTTCCAAGAGATGATAGAGTTGGGGCTAAAACCAAATGAAATAACTTTTCTAGGTGTTCTTTCTGCCTGTAGACATGCTGGTTTAGTGGAAGAAGCATGGACTATTTTTAAGTACATGAAAACTGAATATAAAATGGAACCCCACATAGAGCATTACTATTGCATAGTTGAGCTTCTGAGTCAAGCTGGATGTTTCAAAGAGGCTGAAGAATTGATTGCTGAAATGCCTTTTGAGCCTGATCAGACCATATGGAACTCCTTGCTTGGGGCCTGTGGAACTCACAAGAAGACTGAACTGGTTAATTTTATTGCTGAACGTCTTCTAACAACCTTACCTGAAGACCCGTCAATTCTCGTTACACTTTCGAATGTTTATGCTACTTTGGAAATGTGGGATGATTCAAGAAAAATGAGAGAAGTAATCAAGAAAGTGGGCATGAAAGAAGCTGGGAAAAGCTGGATTCAGATAAAAAGTTAA 1566 39.4 MDLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKMREVIKKVGMKEAGKSWIQIKS* 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3412344 3414417 + Vvi18g313 Vvi18g313 780016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g313 521 Pfam PPR repeat 241 269 IPR002885 -
Vvi18g313 521 Pfam PPR repeat 212 239 IPR002885 -
Vvi18g313 521 Pfam PPR repeat 311 334 IPR002885 -
Vvi18g313 521 Pfam PPR repeat 142 166 IPR002885 -
Vvi18g313 521 Pfam PPR repeat 173 198 IPR002885 -
Vvi18g313 521 Pfam PPR repeat 415 438 IPR002885 -
Vvi18g313 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Vvi18g313 521 Gene3D Tetratricopeptide repeat domain 131 213 IPR011990 GO:0005515
Vvi18g313 521 Gene3D Tetratricopeptide repeat domain 214 290 IPR011990 GO:0005515
Vvi18g313 521 SUPERFAMILY TPR-like 45 497 IPR011990 GO:0005515
Vvi18g313 521 PANTHER BNAC03G28070D PROTEIN 214 516 - -
Vvi18g313 521 PANTHER BNAC03G28070D PROTEIN 85 190 - -
Vvi18g313 521 PANTHER BNAC03G28070D PROTEIN 33 83 - -
Vvi18g313 521 Gene3D Tetratricopeptide repeat domain 1 130 IPR011990 GO:0005515
Vvi18g313 521 Gene3D Tetratricopeptide repeat domain 337 521 IPR011990 GO:0005515
Vvi18g313 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Vvi18g313 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Vvi18g313 521 Pfam E motif 457 518 IPR046848 -
Vvi18g313 521 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Vvi18g313 521 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Vvi18g313 521 TIGRFAM PPR: pentatricopeptide repeat domain 342 376 IPR002885 -
Vvi18g313 521 TIGRFAM PPR: pentatricopeptide repeat domain 378 410 IPR002885 -
Vvi18g313 521 TIGRFAM PPR: pentatricopeptide repeat domain 71 101 IPR002885 -
Vvi18g313 521 Pfam PPR repeat family 67 115 IPR002885 -
Vvi18g313 521 Pfam PPR repeat family 340 386 IPR002885 -
Vvi18g313 521 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 33 83 - -
Vvi18g313 521 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 214 516 - -
Vvi18g313 521 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g313 - - - vvi:100247249 697.967
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g313 . . . . . . . . Cmo04g02450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00193 . Bda01g01413 Bpe02g01626 . . . . . . . . Car04g02262 . Cpe01g02030 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009162 1 3 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31