Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g315 ATGAAAGCTCCTCTAAGTGAACTCAATGGGGTTGTTTCTTCCACTTCTTCCTCATTGTCTATTTCTGCGTCTTCTAACTCTTCTGTTGGTGGGTCCTTTAGAGGAATGCCTTTCAGGAGACTATCTGGGTGCTATGAGTGCAGAATGGTGGTTGACCCTGTTCTTGGAATCACTAGAGACCCTTCATTGAGAACCACCATCTGTTCTTGTCCTGATTGTGGTGAAATCTTCATGAAAGCTGAAAATTTGGAGCTTCATCAGGCCGTCAGACACGCCGTGTCCGAACTGGGCCCAGAAGACACAAGCAAGAACATAGTGGAAATCATATTCCAATCGAGCTGGCTAAAGAAACAAGCGCCAGTCTGCAAAATCGACCGCATTCTCAAAGTCCACAACACCCCCAAAACTATATCCAAATTCGAAGAATACAGAGACTCCATTAAAACCAAAGCCACCAAGCTCCAAAAGAAACACCCACGCTGCGTGGCAGACGGCAATGAACTCCTCCGCTTCCACTGCACCACTTTCGTCTGCTCCATCGGCCTCAACGGTTCCTCCAATCTCTGCAACTCAATTCCAAGCTGCAGTATCTGCAGTATCATCAAGAACGGTTTCAAGGTGGCCGGAGGGGTTCCCGGAAAAGGGATTCTGACCACAGCCACCAGCGGAAAAGCCCATGACAGTTCTAGAATGTCGTTGCCGGATGATAATGAGAAGAGGGCCATGCTGGTTTGCCGAGTGATAGCTGGGAGGGTGAAGAAGAGTGCAACTCAGTTGGAGGGAGGAGTCTGTACGGAGGAGTTTGACTCAGTGGCTGGGGTTGGTGGGGTCTACTCTAATTTGGATGAGCTATATGTGTCTAATCCTAAGGCTATTTTGCCTTGCTTTGTTGTTATCTACACAGAGTCTTAG 912 48.14 MKAPLSELNGVVSSTSSSLSISASSNSSVGGSFRGMPFRRLSGCYECRMVVDPVLGITRDPSLRTTICSCPDCGEIFMKAENLELHQAVRHAVSELGPEDTSKNIVEIIFQSSWLKKQAPVCKIDRILKVHNTPKTISKFEEYRDSIKTKATKLQKKHPRCVADGNELLRFHCTTFVCSIGLNGSSNLCNSIPSCSICSIIKNGFKVAGGVPGKGILTTATSGKAHDSSRMSLPDDNEKRAMLVCRVIAGRVKKSATQLEGGVCTEEFDSVAGVGGVYSNLDELYVSNPKAILPCFVVIYTES* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3422178 3424178 - Vvi18g315 Vvi18g315 780018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g315 303 ProSitePatterns Zinc finger C2H2 type domain signature. 68 91 IPR013087 -
Vvi18g315 303 Gene3D - 92 302 - -
Vvi18g315 303 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 9 301 - -
Vvi18g315 303 SUPERFAMILY ADP-ribosylation 93 302 - -
Vvi18g315 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 96 IPR013087 -
Vvi18g315 303 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 9 301 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14316 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g315 - - vvi:100257501 574.704