Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g316 ATGGACGGGGAGGCTAACCTTCCGGCCCCATCTGCGTCTGCCAATAATCTCAGCCGTCCGATCCTGCCTGACTCCTATCAGAACCGTTCGATCACCTCGTCGTCATCGTCATCATCATCGTCATCATCGTTCTATTCATCTTCTCCGCCGGACTTTCTCCGGCATGTCCAGGCTGCCTTCAAGCGCCACCGTCCACTCGGTACAATGCAGTCTAATAGTATTATGCCAAGGCGTATATTGGTTCCCCGGCGAGAAACCTCAAAGATCACTGCATCAAATGTGGTTCCCACAATAGATGCCAAAAAATCTCAGGATGTGCGTCCTTCAATGCATCAGGGTAACACAGGGAAAGAGTTGGTTGTGGAGATAAGGAACAAGGTATCTGTTGTTGGGGAAACTGAAGAAGATGCACCAATTACTCCACCTTCAATTTCAGGCAGTATCACTAATGAAGATCTATATGATGTGCAACGAGTGCAATGCAAACCCCATGTTCCAGTTGTTGATGGTCAGAAGAAGGTCCAGTTTTTGTTGGGGAAAAATGCTAGCTCACAGGAAATGGAATGGGATGTGAGCAATCAAGTAGAGGCACCAACTGATGTCAATCATGACTTGAAGCATGGGTATTTTCAGAACCTGGAATCAGATGTTACTTCGAGGTCTGATGGTGGGATTTCTTCTTTATTGGCAAAGAAACCTGTACTTGCTCAGGATCAGCTGCACCGATTCAGAAACTTCTTGCAGAGTGACATAAACCACCCCATGACTCAAGCTTCAGTGGCTGGATCATCATGTGCTACTACAATATCTGTTCATGCAACTTCTGCACCAGTGATCAATTCAACAACCTACTGCTCCTCTTCACATCAAGATATTATCATAGTTGACCGCACAGCAATTGCAGCCCAAGCTTCATCTTCTTCCATAGATACCCAGTCGAAAGTTAAGGAATATGGCTTTAGTGAGCAACAAGACAGAACCTCTAAATCTGAAAAACAAGAAAAGGTTGTAAGTGGTAAAGGGTCATCAGTGCCTCGCAAAAAGAATTATGATCCTGACATGTTTTTGAAAGTTAATGGTAAGCTCTATCAAAGGCTTGGTAAGATAGGTAGTGGAGGAAGCAGTGAAGTCCACAAAGTTATATCATCAGATTGTTCTATCTATGCCCTTAAAAAAATCAGGCTTAAAGGTCGTGATTATGCTACTGCATATGGGTTCTGTCAAGAGATTCAATATTTAAACAAGTTGAAAGGGAAGAGCAACATCATACAACTTATTGACTATGAGGTGACAGATAAGACATTGCTCCAAGAAGTCATGAATGGCTCCATGAGTAATAAAGATAGCAGAGTCAAGGATGATGGATGCATATACATGGTGCTTGAATATGGGGAAATTGATTTGGCTAACATGCTGTCCCAGAAATGGAAGGAAATGGATAGCTCTGATCGGACCATAGATGAGAATTGGCTTCGATTTTACTGGCAGCAAATACTTCAAGCTGTCAATACCATACATGAAGAGCGTATAGTGCATTCAGACTTGAAGCCAGCGAATTTTCTTCTTGTCAAAGGTTCCTTGAAGCTGATCGATTTTGGAATTGCTAAAGCTATAATGAGTGATACAACCAACATTCAAAGGGATTCACAGGTGGGTACACTGAGCTACATGTCTCCTGAAGCATTCATGTGCAATGAGAGTGATGCCAATGGAAACACTATAAAGTGTGGTCGGCCATCAGATATCTGGTCACTTGGTTGCATCCTTTACCAAATGGTGTATGGAAGAACCCCCTTTTCAGAATTCAAGACATTCTGGGCCAAGTTCAAAGTCATTACAGATCGTAACCATGAAATAAAGTATGAGCCAGTCTCAAACCCATGGCTTCTTGATATTATGAAGAAGTGTCTTGCATGGGACCGTAATGAGAGGTGGAGGATTCCTGAGCTACTTCAACACCCTTTTCTTGTTCCCCCAGTCCCAGTCCTAGCCCAGTTATCATCCTCTCAAGACCAAAGCTGTAAACTGCTTCAACTGATTACTGAAGCTTGTGCCAATGACCCGAAGGCTTTGATTTTATGTCGTCAACTTCAACAACTACTAAGGGACCCAGTCACGGTGCCAACATCTCAAGTACTAACATCACGAGACCAACAGTGTAAGTTGCTCTCCTATGTGTCAAAGCTTTGCTGTCAACTTCAGGAATATTTATCAGACCCCGATACGTAA 2229 43.2 MDGEANLPAPSASANNLSRPILPDSYQNRSITSSSSSSSSSSSFYSSSPPDFLRHVQAAFKRHRPLGTMQSNSIMPRRILVPRRETSKITASNVVPTIDAKKSQDVRPSMHQGNTGKELVVEIRNKVSVVGETEEDAPITPPSISGSITNEDLYDVQRVQCKPHVPVVDGQKKVQFLLGKNASSQEMEWDVSNQVEAPTDVNHDLKHGYFQNLESDVTSRSDGGISSLLAKKPVLAQDQLHRFRNFLQSDINHPMTQASVAGSSCATTISVHATSAPVINSTTYCSSSHQDIIIVDRTAIAAQASSSSIDTQSKVKEYGFSEQQDRTSKSEKQEKVVSGKGSSVPRKKNYDPDMFLKVNGKLYQRLGKIGSGGSSEVHKVISSDCSIYALKKIRLKGRDYATAYGFCQEIQYLNKLKGKSNIIQLIDYEVTDKTLLQEVMNGSMSNKDSRVKDDGCIYMVLEYGEIDLANMLSQKWKEMDSSDRTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSEFKTFWAKFKVITDRNHEIKYEPVSNPWLLDIMKKCLAWDRNERWRIPELLQHPFLVPPVPVLAQLSSSQDQSCKLLQLITEACANDPKALILCRQLQQLLRDPVTVPTSQVLTSRDQQCKLLSYVSKLCCQLQEYLSDPDT* 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3432982 3445082 + Vvi18g316 Vvi18g316 780019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g316 742 SMART serkin_6 363 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g316 742 Gene3D Phosphorylase Kinase; domain 1 356 443 - -
Vvi18g316 742 SUPERFAMILY Protein kinase-like (PK-like) 355 664 IPR011009 -
Vvi18g316 742 MobiDBLite consensus disorder prediction 320 350 - -
Vvi18g316 742 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Vvi18g316 742 Pfam Protein kinase domain 363 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g316 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vvi18g316 742 Gene3D Transferase(Phosphotransferase) domain 1 477 659 - -
Vvi18g316 742 MobiDBLite consensus disorder prediction 1 48 - -
Vvi18g316 742 ProSiteProfiles Protein kinase domain profile. 363 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g316 742 CDD PKc_Mps1 361 656 - -
Vvi18g316 742 MobiDBLite consensus disorder prediction 9 48 - -
Vvi18g316 742 PANTHER MIXED LINEAGE PROTEIN KINASE 31 707 - -
Vvi18g316 742 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 31 707 IPR027084 GO:0004712|GO:0007093|GO:0051304
Vvi18g316 742 MobiDBLite consensus disorder prediction 320 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g316 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - vvi:100262634 1391.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76370 PF00069 Pkinase 1.10E-55 CL0016 Vvi PK