Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g320 ATGCATCCCTTTTGCTGCATCACCACCGTGTCCGACCCAAATTCGGGGAAACCCTCGCATTCATTGCCGGAATTTCATATGTCACCTCTACCTCCGGCCGTCGGTGGTGGAGGCGTTAGATCTGATTCTGGAAATCGCAGCAACAATCTAAACCACAATCACGGCAATAACATCACCGATCATGGTCGTCTGACGGAGTCAATGTCGCGACCGCCGTCGATTTGTGGCGATCAGCGGGAGGTGAAGATCAACGATATCGTTGGAAATGGAATATCGGGGATTCTTTACAAGTGGGTGAATTATGGCAAGGGATGGCGTCCTCGGTGGTTTGTTCTTCAAGATGGAGTTCTATCTTATTATAAAATCCACGGTCCCGATAAAATCATTGTCAATCAAGAAACAGAGAAAGGATCGAAAGTCATAGGCGAAGAATCGCTCCGGCGAATCAACCGGCACAGGAACGGCAATTCTCAACTCCGGCGCAATCCTGTCGGTGAAGTCCATCTCAAGGTTTCTTCTGTCCGTGAAAGTAAATCCGATGACAAGAGGTTTTCAATTTTTACGGGCACAAAGCGGATGCATCTGAGAGCTGAAACACGCGAAGATAGAGCAGCGTGGATGGATGCATTGCAAGCTGTGAAGGACATGTTCCCAAGGATGTCCAACAGTGAGCTAATGGCTCCTCTAGATAATGTTACTGTATCAACAGAAAAGTTGAGGCAGAGGCTCTTGGAAGAGGGAGTAAGTGAGGCAGCGATCCAGGACAGTGAGCAGATCATGAGGAGCGAGTTTGCGGCTTTGCAGAACCAGATCGTGCTGCTCAAGCAAAAGCAGTTGCTCCTCATTGACACACTTCGACATTTAGAGACAGAAAAAGTTGATCTGGAGAATACACTAGTTGATGAGAGTCAAAGACAGCTGAAAGAGCAAGGTGCTTCATCTAGATTGAGGCAAGACAAATATAGTGAAGGAAGTGGTAGTGAATCTGAAGATGACAATGAAAGAGTTGATGCTGCAGAGGAAGAAACAGATGATGATGATAATACTTTCTTTGATACTCGGGATTTTCTTTCATCAAGTTCTTTTAAAAGTACTGGGTCTGATTTTCGGATATCATCCTTCTCTTCTGATGATGATGATTTTTATGCTGTTGAATCTGAGGACGGTACTGATCCTTCCATCATATCTGTTGGCAAAAACTATCCTCATGTTAAGCGGCGCAATAAATTGCCTGATCCAGTTGAAAAAGAGAAGGGGGTTAGTCTCTGGTCAATGATTAAGGATAATATTGGGAAGGACCTAACAAAAGTTTGTCTTCCTGTTTACTTTAATGAGCCTCTCTCTTCTCTGCAAAAATGTTTTGAAGATCTGGAATATTCATATCTTCTTGATCGGGCTCATGAATGGGGAAAAATGGGAAATAGTCTAATGAGGATTTTGAATGTAGCTGCATTTGCTGTTTCTGGATACGCTTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGGTTAGTCATCACCCTATGATTGTTGCATGTCACTGTGAGGGTACGGGATGGAAATTTTGGGCAGATAGCAATTTAAAGAGCAAATTTTGGGGTCGGTCTATTCAGCTTGATCCCATTGGCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAGGTAACAACATCAATATACAATCTTATATTGGGAAAGTTGTACTGTGATCACTATGGTACAATGCGCATACAGGGAAATCGTGAGTATTCATGTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGGTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTTGGAAAGTGGGATGAGAGCATGCATTATGTGATTGGAGACTGTTCTGGCAAGGGGAAAGGAAATGATACTTTATCAGAATCTCATTTGCTATGGAAGCAGTGCAGGCCTCCCAAGTTCCCCACTAGATATAACTTAACACGCTTTGCTATCACACTGAATGAGCTCACTCCTGGATTGAAGGAAAAGTTGCCTCCTACAGATTCAAGGCTCAGACCCGATCAAAGGTGCCTTGAAAACGGGGAATATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATAAAGGCAGCGATACCTATCGCTATGTTGGTGGGTATTGGGAGGCAAGAGAAAAGGGGAACTGGGATTCATGTCCTGATATCTTTGGCCAAATCTCCACTGACCAAATATCGGATTAA 2394 44.07 MHPFCCITTVSDPNSGKPSHSLPEFHMSPLPPAVGGGGVRSDSGNRSNNLNHNHGNNITDHGRLTESMSRPPSICGDQREVKINDIVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNQETEKGSKVIGEESLRRINRHRNGNSQLRRNPVGEVHLKVSSVRESKSDDKRFSIFTGTKRMHLRAETREDRAAWMDALQAVKDMFPRMSNSELMAPLDNVTVSTEKLRQRLLEEGVSEAAIQDSEQIMRSEFAALQNQIVLLKQKQLLLIDTLRHLETEKVDLENTLVDESQRQLKEQGASSRLRQDKYSEGSGSESEDDNERVDAAEEETDDDDNTFFDTRDFLSSSSFKSTGSDFRISSFSSDDDDFYAVESEDGTDPSIISVGKNYPHVKRRNKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAHEWGKMGNSLMRILNVAAFAVSGYASTEGRTCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWADSNLKSKFWGRSIQLDPIGALTLEFDDGETFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREYSCKLKFKEQSIIDRNPHQVQGIVQDRHGKTVATLFGKWDESMHYVIGDCSGKGKGNDTLSESHLLWKQCRPPKFPTRYNLTRFAITLNELTPGLKEKLPPTDSRLRPDQRCLENGEYEKANSEKLRLEQRQRQSRKMQERGWKPRWFVKDKGSDTYRYVGGYWEAREKGNWDSCPDIFGQISTDQISD* 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3515279 3530530 + Vvi18g320 Vvi18g320 780023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g320 797 MobiDBLite consensus disorder prediction 312 332 - -
Vvi18g320 797 MobiDBLite consensus disorder prediction 333 349 - -
Vvi18g320 797 CDD PH_ORP_plant 91 222 - -
Vvi18g320 797 Pfam Oxysterol-binding protein 421 776 IPR000648 GO:0008289
Vvi18g320 797 SUPERFAMILY PH domain-like 91 221 - -
Vvi18g320 797 ProSiteProfiles PH domain profile. 88 215 IPR001849 -
Vvi18g320 797 SUPERFAMILY Oxysterol-binding protein-like 416 790 IPR037239 -
Vvi18g320 797 Gene3D - 718 781 - -
Vvi18g320 797 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 791 IPR000648 GO:0008289
Vvi18g320 797 Pfam Pleckstrin homology domain 96 211 - -
Vvi18g320 797 MobiDBLite consensus disorder prediction 304 351 - -
Vvi18g320 797 SMART PH_update 89 217 IPR001849 -
Vvi18g320 797 MobiDBLite consensus disorder prediction 12 76 - -
Vvi18g320 797 Coils Coil 285 305 - -
Vvi18g320 797 MobiDBLite consensus disorder prediction 41 66 - -
Vvi18g320 797 Gene3D - 507 679 - -
Vvi18g320 797 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 791 - -
Vvi18g320 797 Gene3D - 89 217 IPR011993 -
Vvi18g320 797 Coils Coil 726 746 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g320 K20456 OSBP; oxysterol-binding protein 1 - vvi:100245477 1550.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi7g1289 Vvi18g320 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g320 . . . . . . . . Cmo04g02445 Cmo15g00720 . . . . . . . . . . . . . . . . . . . . . Cone4ag1377 Cone7ag1554 Cone17ag1264 Cone20ag0464 . . . . Blo17g00190 Blo18g00195 . Bda13g01496 Bpe02g01623 Bpe14g00370 Bma01g00837 Bma02g00235 . . . . . Car04g02258 Car15g00652 Cpe01g02027 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44