Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g325 ATGGCGGCATCCGTTGATAATCGCCAGTTCTCTCGGCTGGAATCCTCACTCAACGGCGTTGTTCGCTCCTTCAAAACTGGTTCCAACCACCGTTCCGATTCGCCAGTTCGTGGCGCAGTGGAGGATGATTCCTCCAGTGACGACGAAAATGAACCCGATTGGAAAGATTTGGTTCGCAAGGGTAACAGTGAATTAGAGCCGTCCGCGCCACTGAACCGACTCATGCACCATGGCTTCATCACGCCCGTCCCTCTCCACTACGTTCGCAACCACGGTGCGGTCCCCAAGGGCTCCTGGGACAACTGGACCGTGGAGGTATCTGGACTCGTCAAGCGACCCGCAAGATTCACCATGGACCAACTCGTGAACGAGTTCCCCACTCGGGAGTTTCCAGTCACACTGGTCTGCGCCGGTAACCGTCGGAAAGAGCAGAACATGCAAGGGGGACTGAATGTGTGTTTCGAAGGCGCGGAAGATCTACCAGGTGGAGGCGGCTCCAAGTACGGAACCAGCATTAAAAATGAAATAGCGATGGATCCGTCGCGAGATATCATATTGGCTTACATGCAGAACGGTGAACGATTATTACCAGATCATGGGTTCCCAGTGAGGATGATCATTCCAGGGTTCATTGGGGGCCGTATGGTAAAATGGCTCAAACGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGCTTGGTGGTATAAGCCGGAGTACATCATTAATGAGCTGAACATTAACTCCGTCATCACTACACCATGCCACGAAGAAATCTTACCCATCAACTCCTGGACGACTCAGAGGCCCTACACGTTGAAGGGCTACGCATACTCTGGAGGTGGGAAGAAAGTGACACGTGTGGAGGTGACGATGGACGGAGGAGAAACGTGGCAAGTGTGCAGACTGGACCACCCAGAGAAGCCCAACAAATACGGCAAGTACTGGTGCTGGTGCTTCTGGTCACTGGAGGTGGAGGTGCTGGATCTCATTGGTGCCAAAGAGATTGCAGTTCGAGCCTGGGATGAGACCCTCAACACCCAGCCCGAGAAGCTCATCTGGAACGTCATGGGAATGATGAACAACTGCTGGTTCAGAGTAAAAACAAATGTGTGCAAGCGTCACAGGGGAGAGATTGGAATCGTATTCGAGCATCCAACTCTTCCAGGAAACCAATCCGGAGGATGGATGGCTCGTGAAAAGCACCTTGTCCAATCCTCTGATGCCAACTCAACTCTGAAGAAGAGTGTCTCATCTCCTTTCATGAACACCTCCTCCAAAATGTACTCCATGTCCGAGGTCAAAAAACACAACTCAGCCGACTCCACATGGATCGTCGTCCACGGCCACGTCTACGATTGCACCCGCTTCCTCAAAGACCACCCTGGCGGTACCGACAGCATCCTCATCAATGCTGGCACCGACTGCACTGAGGAGTTCGACGCCATACACTCTGATAAAGCCAAAAAGCTTCTCGAGGACTATCGAATTGGTGAGTTGATGACCACTGGTTACACCTCCGACTCCTCTGCATCATCTCCCAACACCTCGAAAATCCCATGCAAGCTCGTCTCCAAGGATTCCATCTCACATGACGTACGTCGTTTTCGATTTGCATTGCCGTCTGAAGATCAAATTATTCAAGCTGTGTTGAAGGATCCAGAGGATGACACTGAGATGTATGTGGTGTATGCGAATCGCACTGAAGATGATATATTGCTATGGGAGGAGCTTGATGCTTGGGCTGAAAAGCATGAGAGGTTGAAGGTTTTGGGTTTCATCACAGAGAGTATTCTGAGGGAGCACATCCCATCTGCTTCCGGTGATACTTTGGCTCTGGCTTGTGGGCCACCGCCGATGATTCAGTTTGCAGTGCAACCCAATTTGGAAAAGTTGGGCTATGATATTAAGAATTCTTTGCTGGTGTTCTGA 1995 51.03 MAASVDNRQFSRLESSLNGVVRSFKTGSNHRSDSPVRGAVEDDSSSDDENEPDWKDLVRKGNSELEPSAPLNRLMHHGFITPVPLHYVRNHGAVPKGSWDNWTVEVSGLVKRPARFTMDQLVNEFPTREFPVTLVCAGNRRKEQNMQGGLNVCFEGAEDLPGGGGSKYGTSIKNEIAMDPSRDIILAYMQNGERLLPDHGFPVRMIIPGFIGGRMVKWLKRIIVTTQESDSYYHYKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTTQRPYTLKGYAYSGGGKKVTRVEVTMDGGETWQVCRLDHPEKPNKYGKYWCWCFWSLEVEVLDLIGAKEIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKTNVCKRHRGEIGIVFEHPTLPGNQSGGWMAREKHLVQSSDANSTLKKSVSSPFMNTSSKMYSMSEVKKHNSADSTWIVVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKLLEDYRIGELMTTGYTSDSSASSPNTSKIPCKLVSKDSISHDVRRFRFALPSEDQIIQAVLKDPEDDTEMYVVYANRTEDDILLWEELDAWAEKHERLKVLGFITESILREHIPSASGDTLALACGPPPMIQFAVQPNLEKLGYDIKNSLLVF* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3577961 3582206 - Vvi18g325 Vvi18g325 780028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g325 664 Gene3D Translation factors 530 569 - -
Vvi18g325 664 Gene3D - 443 523 IPR036400 -
Vvi18g325 664 SUPERFAMILY E set domains 265 392 IPR014756 -
Vvi18g325 664 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 478 485 IPR018506 GO:0020037
Vvi18g325 664 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 108 143 IPR022407 GO:0043546
Vvi18g325 664 Pfam Mo-co oxidoreductase dimerisation domain 261 392 IPR005066 GO:0016491|GO:0030151
Vvi18g325 664 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 445 525 IPR036400 -
Vvi18g325 664 Pfam Oxidoreductase NAD-binding domain 566 646 IPR001433 GO:0016491
Vvi18g325 664 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 61 263 IPR036374 -
Vvi18g325 664 Gene3D - 150 264 IPR036374 -
Vvi18g325 664 Gene3D - 570 664 IPR039261 -
Vvi18g325 664 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 447 522 IPR001199 -
Vvi18g325 664 PANTHER NADH-CYTOCHROME B5 REDUCTASE 60 146 IPR001834 GO:0016491
Vvi18g325 664 PANTHER NADH-CYTOCHROME B5 REDUCTASE 566 664 IPR001834 GO:0016491
Vvi18g325 664 PANTHER NADH-CYTOCHROME B5 REDUCTASE 538 566 IPR001834 GO:0016491
Vvi18g325 664 PANTHER NADH-CYTOCHROME B5 REDUCTASE 148 529 IPR001834 GO:0016491
Vvi18g325 664 CDD cyt_b5_reduct_like 566 659 - -
Vvi18g325 664 Pfam Oxidoreductase molybdopterin binding domain 151 233 IPR000572 -
Vvi18g325 664 Gene3D - 265 440 - -
Vvi18g325 664 PANTHER NITRATE REDUCTASE [NADH] 2 538 566 - -
Vvi18g325 664 PANTHER NITRATE REDUCTASE [NADH] 2 148 529 - -
Vvi18g325 664 PANTHER NITRATE REDUCTASE [NADH] 2 566 664 - -
Vvi18g325 664 PANTHER NITRATE REDUCTASE [NADH] 2 60 146 - -
Vvi18g325 664 Pfam Cytochrome b5-like Heme/Steroid binding domain 452 521 IPR001199 -
Vvi18g325 664 PRINTS Cytochrome B5 signature 472 482 IPR001199 -
Vvi18g325 664 PRINTS Cytochrome B5 signature 482 496 IPR001199 -
Vvi18g325 664 PRINTS Cytochrome B5 signature 497 504 IPR001199 -
Vvi18g325 664 PRINTS Cytochrome B5 signature 509 521 IPR001199 -
Vvi18g325 664 SMART Cyt_b5_2 450 522 IPR001199 -
Vvi18g325 664 MobiDBLite consensus disorder prediction 21 56 - -
Vvi18g325 664 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 566 658 IPR039261 -
Vvi18g325 664 Gene3D - 28 149 IPR036374 -
Vvi18g325 664 PRINTS Eukaryotic molybdopterin domain signature 79 95 IPR008335 GO:0016491
Vvi18g325 664 PRINTS Eukaryotic molybdopterin domain signature 294 308 IPR008335 GO:0016491
Vvi18g325 664 PRINTS Eukaryotic molybdopterin domain signature 308 320 IPR008335 GO:0016491
Vvi18g325 664 PRINTS Eukaryotic molybdopterin domain signature 335 345 IPR008335 GO:0016491
Vvi18g325 664 PRINTS Eukaryotic molybdopterin domain signature 360 372 IPR008335 GO:0016491
Vvi18g325 664 PRINTS Eukaryotic molybdopterin domain signature 373 386 IPR008335 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g325 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - vvi:100264320 1112.06
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90