Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g327 ATGATATATGTTACGTTACTTCCTGAAGGGTGGAACCCCACACCCCTAACCCACCACCCTTACGCAACCATCGTTCGTCCTTCCTTTCTCTCTCCCTCTCTTCTTTCTTCCTCTTCGCTCCCAGCCCTACCGGATTCACCTGATTTTAAATTTCAAACCCTAGCCATCTTTGCCGCAAGACAGTTTGACTTGAAAATGGCAAGGGTTAACAAAGTGAGACGAAAGGCTAATTCCCGACTTCACAGGGCAACCCCATTCCCATTATCATCTCACCCTCGCAAGGTTCTGAAAGATGTTCATCTGAAGAAGAAACACTCTAAAGCATTGGCAAAAAAAGACTGGGAAGATGCAACCTGCTCAGTTTGTATGGAGTTCCCTCACAATGCTGTACTACTCCTTTGCTCCTCCTATGAGAAAGGTTGCCGCCCTTACATGTGTGCTACTAGTTGTCGTTACTCCAACTGTCTTGATCAGTACAAGAAAGCCTATACTAAAGTTACTTCAACCGAAATGTCAGAGCTTCTGTGTCCACTCTGCCGAGGACAGGTGAAAGGTTGGACAGTGGTGGAACCAGCACGTAAGTATCTCAATGCCAAGAAGAGAACATGCATGCAGGATAACTGCTCATATGTTGGAACATACAAACAACTCAGGAAGCATGTTAGAGCAGAGCACCCACTGGCACGACCTCGTGAAGTGGACCCTTCACTTGAAGAGAAATGGAAGAGGCTTGAAGGTGAAAGAGAACGGAATGATGTGCTCAGTACAATTAGATCATCAATGCCAGGTGCATTGATTCTGGGGGATTATGTGATAGAGGGTAACTATCATGGGTTTTATAGAGATTATGCTGAGTATGATGCAGAAGCATATTTTGATGATGCTCTTTTCTCTTTGGATTCTTTTGGTAGAGGGCGGAGGGGAGGTATCCACTTGGGTAGCAGATTTAACAGAACATATGATTTATTGGATGAGGAAGACCATGAGATGCGTCGCCATGTGGCTGCACCTGGACGTGGTCTCCACAGGTTGCTGTATGGGAGGTCAAGAAGGCGACAAAGGCACAGAGAAGCTAATGGAGAACGTTAA 1089 45.82 MIYVTLLPEGWNPTPLTHHPYATIVRPSFLSPSLLSSSSLPALPDSPDFKFQTLAIFAARQFDLKMARVNKVRRKANSRLHRATPFPLSSHPRKVLKDVHLKKKHSKALAKKDWEDATCSVCMEFPHNAVLLLCSSYEKGCRPYMCATSCRYSNCLDQYKKAYTKVTSTEMSELLCPLCRGQVKGWTVVEPARKYLNAKKRTCMQDNCSYVGTYKQLRKHVRAEHPLARPREVDPSLEEKWKRLEGERERNDVLSTIRSSMPGALILGDYVIEGNYHGFYRDYAEYDAEAYFDDALFSLDSFGRGRRGGIHLGSRFNRTYDLLDEEDHEMRRHVAAPGRGLHRLLYGRSRRRQRHREANGER* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3587964 3594834 - Vvi18g327 Vvi18g327 780030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g327 362 Pfam Protein of unknown function (DUF1644) 168 255 IPR012866 -
Vvi18g327 362 PANTHER OS01G0612600 PROTEIN 169 356 - -
Vvi18g327 362 PANTHER OS01G0612600 PROTEIN 66 171 - -
Vvi18g327 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 228 IPR013083 -
Vvi18g327 362 PANTHER BNAC03G28140D PROTEIN 169 356 - -
Vvi18g327 362 PANTHER BNAC03G28140D PROTEIN 66 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g327 - - - vvi:100259117 548.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g327 . . . . . . . . Cmo04g02438 Cmo15g00731 . . . . . . . . . . . . . . . . . . . . . Cone4ag1373 Cone7ag1558 . . . . . . Blo17g00196 Blo18g00198 . Bda13g01501 Bpe02g01620 Bpe14g00365 Bma01g00840 Bma02g00240 . . . . . Car04g02250 Car15g00658 Cpe01g02022 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004734 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 3 1 42