Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g328 ATGAAGGGTGCGTTTCTGGGAAGTGGATCCTTTGGAACGGTGTATGAAGGGATGTCCGAGGATGGAATATTTTTTGCTGTAAAGGAAGTTTCATTGCTTGATCAAGGAAGCCAGGGCAAGCAAAGTCTTTACCAACTTGAGCAGGAAATTGATCTTTTAAGTCAATTTCAACATGAGAACATAGTTCAATATCATGGCACAGCTAAGGATGAATCAAAGCTCTATATCTTTCTTGAACTTGTAACTAAAGGATCACTTGCAAGTCTCTATCAGAGATATAATCTTGGAGATTCCCAAGCCTCAGCATACACAAGACAAATTCTGCATGGTTTGAATTATCTTCATGAGCGAAATGTGATTCACAGGGACATCAAATGTGCAAACATATTGGTGGGTGCCAATGGGTCTGTGAAACTTTCAGATTTTGGGTTGGCAAAGGCAACCCAATTGAATGATGCTAAATCTTGCAAGGGAACTCCATTCTGGATGGCCCCTGAGGTTGTCAATGGGAAGGGCCAAGGGTACGGGCTTGCAGCTGATATTTGGAGCCTCGGGTGCACCGTGTTAGAAATGCTAACCCGTGAGGTTCCATACTCTCATTTGGAATCTATGCAGGCTTTGTTTAGGATTGGAAAGGGTGAGCCACCACCTGTTCCTGACTCTCTCTCCCCAGATGCACGGGATTTTATCCTGAAATGCCTTCAAGTTATTCCAGATGATCGTCCCACAGCAGCTCAGCTCTTAAACCATCAATTTGTGAAGAGGCCACCACCCACTTCTTCAGGCTCAGCATCGCCTCTCTATCATGGAAGACGGTCTTAA 822 44.4 MKGAFLGSGSFGTVYEGMSEDGIFFAVKEVSLLDQGSQGKQSLYQLEQEIDLLSQFQHENIVQYHGTAKDESKLYIFLELVTKGSLASLYQRYNLGDSQASAYTRQILHGLNYLHERNVIHRDIKCANILVGANGSVKLSDFGLAKATQLNDAKSCKGTPFWMAPEVVNGKGQGYGLAADIWSLGCTVLEMLTREVPYSHLESMQALFRIGKGEPPPVPDSLSPDARDFILKCLQVIPDDRPTAAQLLNHQFVKRPPPTSSGSASPLYHGRRS* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3594892 3606331 - Vvi18g328 Vvi18g328 780031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g328 273 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g328 273 MobiDBLite consensus disorder prediction 253 267 - -
Vvi18g328 273 ProSitePatterns Protein kinases ATP-binding region signature. 6 28 IPR017441 GO:0005524
Vvi18g328 273 SUPERFAMILY Protein kinase-like (PK-like) 4 258 IPR011009 -
Vvi18g328 273 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 2 261 - -
Vvi18g328 273 PRINTS Tyrosine kinase catalytic domain signature 78 91 IPR001245 GO:0004672|GO:0006468
Vvi18g328 273 PRINTS Tyrosine kinase catalytic domain signature 113 131 IPR001245 GO:0004672|GO:0006468
Vvi18g328 273 PRINTS Tyrosine kinase catalytic domain signature 179 201 IPR001245 GO:0004672|GO:0006468
Vvi18g328 273 PRINTS Tyrosine kinase catalytic domain signature 222 244 IPR001245 GO:0004672|GO:0006468
Vvi18g328 273 MobiDBLite consensus disorder prediction 251 273 - -
Vvi18g328 273 SMART serkin_6 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g328 273 ProSiteProfiles Protein kinase domain profile. 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g328 273 PIRSF TyrPK_CSF1-R 1 94 - -
Vvi18g328 273 PIRSF TyrPK_CSF1-R 95 256 - -
Vvi18g328 273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vvi18g328 273 Gene3D Transferase(Phosphotransferase) domain 1 2 265 - -
Vvi18g328 273 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 2 261 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76371 PF00069 Pkinase 4.80E-69 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g328 K13414 - vvi:100264291 552.747