Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g33 ATGGATTCAGATTTCGGCATTCCCAGAGAACTCTCGGATCTTCAAAAACATCGATGTCTTTACGAACCTGAACTCCCTCCTTGCCTTCAGGGGACTACTGTCAGGGTAGAATTTGGTGATGCAACAACTGCTTCAGACCTCTCTGGTGCCCGCACAATAAGCCGATCCTTTCCTCACACATATGGTCAGCCATTGGCTCACTTTCTCAGGGCTACTGCAAAGGTCCCTGATGCTCAGGTTATAACTGAGCATCCACCCATTAGGGTGGGAGTGGTCTTCTGTGGGAGACAATCTCCGGGAGGACACAATGTCATATGGGGTCTTCACAATGCTCTCAAAATTCACAACCCTAAGAATATTTTACTTGGGTTTTTGGCTCAGTATGATCGGATGGATAATTGGGCAATCATGTCATCTGTGATGGTGATGTTTGAGGGTTACTTGGCTTCTGATGCATACAACTCTAACATACATTTGAGTCTTTTTTGTGGCTCTGAAGGTTTATTTGCTCAGAAAACTCTTGAGATCACTGATGACATTCTTTCAACCTACAAGAATCAAGGTGGTTATGATTTGCTTGGACGGACAAAGGATCAAATAAGAACAACTGAACAAGTTAATGCTGCATTATCCACATGCAAAAATTTGAAGTTGGAGGGCCTTGTCATTATTGGAGGGGTGACATCAAACACAGATGCTGCTCAGCTTGCAGAAACCTTTGCAGAAGCAAAATGCCAAACAAAGGTGGTTGGGGTTCCTGTTAGTTTGAATGGGGATCTGAAGAACCAATTTGTTGAAAGCAATGTTGGTTTTGATACAATATGTAAGGTCAATTCCCAACTCATCAGCAATGTCTGCACTGATGCTCTTTCTGCAGAGAAGTATTATTATTTTATCCGACTCATGGGCCGGAAGGCATCACATGTTGCTTTGGAGTGCACTCTTCAGTCACATCCAAATATGGTCATTCTTGGTGAGGAGGTGGCTGCATCAAAGCTTACTCTTTTTGACTTGACAAAACAAATTTGTGATGCAGTTCAAGCCAGGGCTGAACAAGACAAGTATCATGGTGTCATCCTACTTCCTGAAGGACTTATTGAGAGCATTCCTGAAGTTTATGCTCTCTTGCAGGAAATTCATGGTTTGCTCAGGCAAGGTGTTTCTGCTGTTAACATTTCTTCTAAACTTTCACCTTGGGCATCTGCCTTGTTCGAATTCTTGCCACCCTTTATCAAGAAGCAGCTGCTCCTTTACCCTGAATCAGATGACTCAGCACAGTTATCTCAGATTGAAACAGAGAAACTTCTCGCACATCTTGTGGAGGCAGAAATGAACAAACGATTGAAGGAAGGTACATACAAGGGGAAGAAATTCAATGCCATCTGCCACTTCTTTGGTTATCAGGCTCGGGGATCCTTACCATCAAAATTTGACTGTGATTATGCCTACGTTCTTGGGCACATTTGCTACCATGTTCTAGCAGCTGGCTTAAATGGTTACATGGCAACTGTAACTAACCTAAAGAATCCTGTGAACAAATGGCGTTGTGGTGCCGCTCCAATCACAGCGATGATGACTGTAAAGCGTTATTCCCGTGGTCCTGGGACCTCTTCAATTGGAAAACCTGCTGTTCATCCTTATGCTTTGGATCTGAAGGGCAAAGCATACGAGCTTCTGAGTCAAAATGCAACAAAATTTTTGCTGGACGATCTTTACAGAAACCCAGGACCCCTCCAGTTTGATGGTCCAGGTGCTGATGCCAAGGCTGTGACTTTGTGCGTTGAGGACCAGGATTACATGGGTCGTATCAAGAAACTCCAGCAATATCTTGACAAGGTGCGAACCATTGTGAAACCAGGATGCTCACAGGATGTTCTCAAAGCAGCTTTGAGTGCCATGGCCTCTGTGACAGAGATTCTCTCTGTAATGACATCACCTTCTAGTGGCCAGACACCGCTTTGA 1962 44.14 MDSDFGIPRELSDLQKHRCLYEPELPPCLQGTTVRVEFGDATTASDLSGARTISRSFPHTYGQPLAHFLRATAKVPDAQVITEHPPIRVGVVFCGRQSPGGHNVIWGLHNALKIHNPKNILLGFLAQYDRMDNWAIMSSVMVMFEGYLASDAYNSNIHLSLFCGSEGLFAQKTLEITDDILSTYKNQGGYDLLGRTKDQIRTTEQVNAALSTCKNLKLEGLVIIGGVTSNTDAAQLAETFAEAKCQTKVVGVPVSLNGDLKNQFVESNVGFDTICKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKYHGVILLPEGLIESIPEVYALLQEIHGLLRQGVSAVNISSKLSPWASALFEFLPPFIKKQLLLYPESDDSAQLSQIETEKLLAHLVEAEMNKRLKEGTYKGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHVLAAGLNGYMATVTNLKNPVNKWRCGAAPITAMMTVKRYSRGPGTSSIGKPAVHPYALDLKGKAYELLSQNATKFLLDDLYRNPGPLQFDGPGADAKAVTLCVEDQDYMGRIKKLQQYLDKVRTIVKPGCSQDVLKAALSAMASVTEILSVMTSPSSGQTPL* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 425429 432998 + Vvi18g33 Vvi18g33 779736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g33 653 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 10 598 IPR011183 GO:0005524|GO:0006096|GO:0047334
Vvi18g33 653 Gene3D Phosphofructokinase; domain 3 369 433 - -
Vvi18g33 653 Gene3D - 160 549 - -
Vvi18g33 653 Gene3D - 13 131 - -
Vvi18g33 653 SUPERFAMILY Phosphofructokinase 163 595 IPR035966 GO:0003872|GO:0006096
Vvi18g33 653 PIRSF PPi_PFK_PfpB 139 607 IPR011183 GO:0005524|GO:0006096|GO:0047334
Vvi18g33 653 PIRSF PPi_PFK_PfpB 4 133 IPR011183 GO:0005524|GO:0006096|GO:0047334
Vvi18g33 653 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 1 127 - -
Vvi18g33 653 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 154 650 - -
Vvi18g33 653 SUPERFAMILY Phosphofructokinase 12 125 IPR035966 GO:0003872|GO:0006096
Vvi18g33 653 Pfam Phosphofructokinase 164 491 IPR000023 GO:0003872|GO:0006096
Vvi18g33 653 Gene3D Phosphofructokinase domain 271 584 IPR035966 GO:0003872|GO:0006096
Vvi18g33 653 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 154 650 - -
Vvi18g33 653 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 1 127 - -
Vvi18g33 653 TIGRFAM PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase 158 595 IPR011183 GO:0005524|GO:0006096|GO:0047334
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g33 K00895 pfp, PFP; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] - vvi:100249662 1214.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g33 . Blo12g00840 . Bda03g00336 Bpe02g00290 Bpe04g00295 Bma04g00304 Bma01g02424 . . Cma01g02045 Cma09g00016 Car01g01611 . . . . . . . . . . . . . . . . . . . . Cone17ag1482 Cone20ag0004 Lsi04g02427 Csa04g02743 . . . . . . . . . . . Cmo01g02102 Cmo09g00015 . . . Car09g00015 . Cpe02g00011 . . . . . . . Cla11g01857 . Cec11g1951 . . Cmu11g1892 . . . Chy07g00431 Cme07g00019
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43