Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g332 ATGACCGGAGGCCGATGTCACCGGCAGAAGAAGATGATGGGTAGGGGTGCGGAAAGAGGCTGCGGCACCGAGGAGAAGCCGTGTCCCATTTCTAGGGCTCCAGCGAAAATTTCGGCGAAACAGCCGGGGAATCCAGGAAAAGAGGTATCATTGGGCGTCGATTTATATGCCCAAGCCCGGAAAGCACTGTCTGATCGCTGCCCATTCGAGACAGAGGAGGCTTTAGCAAATACTGTTTCCACACTTCCGAGTGGATTGGCCTGTTTATTGTCTAAACATTCTGATAGTAGAAAGAGACACAAGAAGTCTCATTCTGACACAAAATCTTCATCCCGGCAGTCTCGTGGTGCGAATATTTGGTTGGAGACAGAGGGGTACTTCAGAGAATTGGCATTTCCGGATATTGAAACCCTGGTTGAGGTATCTTCTTCTGTTTCTTTAGCTACCGAGAAGAATTTTTTGATTCCATATATAGGAAACCCTATCGAGGCTAATGGGGTTTCAAGTGAACTTCAGAATGGTGAGAATGCAAATGGTAATGGCATTGTTGTTAAAGAAGAGGACAAGAAAGAGGACAATCAGTTAATGGAAATTGACAGTGTGGAAACTGAAGTTTTGCCCCCGGAAGAAAAGGCTTGTTCTCAGTCCCCTCTATCTAGTGGTCTGGAGTGGCTTTTAGGTTTGAAGAATAAAGTTCTTCTGACCTCAGAACGTCCTAATAAGAAAAGAAAACTTTTGGGTAGTGATGCGGGGTTAGAGAAACTTATAATCGCTCGACCATGTGAAGGGAATTCTTCTTTAACGATGCCATGGATGCCTGAGGTTTATGTGGAGGACACAAGGAAGATGGAGCCTATTATGAATATTGATGGAATAAAGGAAACTCGGAAAAAGTTGGTATGCAATGTGTGTAAGGTGAAATATGGTGCTTGTGTTCGATGCAGTAATGGAGCTTGCAGAACTTCTTTCCATCCCATATGTGCAAGGGAAGCAAGACACAGAATGGAGATTTGGGGAAAATTTGGTTGTGATAATCTTGAGCTACGGGCCTTTTGTTTAAAGCATTCAGAAGTCCAGGATGTTAGCAGCACCCAACAGTTAGGAGATTTTTCTGCAGCTGATGGCAGCAACACTTCAAGTCACCCACCAGTGACATCAGTTAACAAACCACAAAAGTTAAAGATTGGTCTCAGAAATGGTGATAAAATTGCTGTTCATATGGAAACACCTGATAACAATTCCAATAAATTGAGTGATGGTGAATTTCAAGAAACAGGATTGCCAAATACCAGATCAAAGGCTGAACTTATGTCAGGATGTGCTGATGCACAGCAACTCATTGGTATGCGTATGCTAGAGACGATTAACAGTGAAGGTGTTAATCCATCTGACTCGATAAATCTTGCACTGATTCTAAAGAAGTTAATTGAGCGGGGGAAAGTCAGTGTGAAAGATGTAGCACTGGATATTGGAGTTTCACCTGATTCGTTGGCTGCAACACTTGCTGATGATCACTTGGTCCCTGACTTGCAATGCAAAATACTGAAATGGCTTAAGGATCATGCTTACATGGGTACCTTGCAAAAAAATTTGAAAAGACCAAATCTGGCAAAGATTTGTCTTTCCATGAGATCTAATCCTCCATATGCATATCTGATATCTGTCCTCTCCACAGCGGTATTGACCCTTTTCGGGATCAGCTTTTTCTTCCACTGTTCAATTGGTGCACAAACATCATATGAATTTTACCCATTGAATTTTGGTTTCTTAGCTTGGGTGTCTTTATCCCTAAAGTGCGATATTCCTTTCTTAAAGAAGGAGAAAAACAATAATGCTAATGATGACGATGATGATGGGTTTGGAGTTGCTACTTGTTTTATAGTCCTCCATCACAACATATCCCACATAATTAAAATGAAATTTGGGGTGAATGAGCATAGGAAGAATACTTTGGTTATGAATAATTTGAAGTTTGAGTTGTTCTTTCTTTCAGATAGAACTCCCTTTATCAACTGTGACAACAAGATTTCCTTCCATCTCATTGTGAGCTTTCTTTGGACTGGCCCTTGTGTGGAATTCATCTGTCTTAAAGAGAGCAGTGTAGAGAGGATGGAATATTTTGCAAAATCTGAGTGTTCAAAAGCTCAGGACTGCAATTGGGAAGGATTCAACCTCCCAACCTACTTGATCAATATTACGAATCCTTATTCAAATGAAGAAGGCAACATTTGTAAGAACCATTGTTCTCCACATCTTCCCTATACAGGGAAGCACCTTCCCCCCTTCTCCAATGGGGAACCTTTCTCTCTCTCTCTCACTGTCTCCCCTATGACTTTAATCCCCCTTTTTTTTTTTCTTAATGTTCTTATGGGGGCCGAGGGTTCATGTTTTCTCATGCTTCCATCCCATGAATTTTGCATATTGGATCCAGTCTGTATTAGTGATTCAAGTGGGAAAAAATCCTCGCCTTTGGTTTGCAGTAGTGAACCTTCAAACTGCAGTCTTTCTGATAGTGGCCGAATTGAGGAGGATTGTGGTGAGGATAATACTTTGGTGAATTTAAACAAGGAAAATCCTGTTTGTTCAGTTGTGGATCCAGTTCCTCCTGATCTGATAAACACAAAAACAGTATCTGGTTCTTACATTCACCCACTTATTTACCAGAAGCTGAGGCAAACACAGAGTGGGTTGCTTTTAAAGAACACAATTTGTTCAAGGGGCCCAGAAATTTCTCCTATGGAAACATCTTCTTATGTCAGAGTTCCTTGCAATCACCAAAGTCAACATTCAACATGCACTGAAATGATTTGTAAATCTGAGGGAGAAAATTTAGAGCAGTTGGTTAAGGCTAGGAATACAGGGGTTTTAGAACTTTCTCCTGAAGACGAAGTTGTAGGGGAACTTATTTATTTTCAGAATAGGCTTCTTGGCAATGCCGTTGCAAGAAAGAACCTTAGTGATGATTTAATTTGTAAGGTTGTGAAGAGTCTACCTCAGGAGATTGAAGTGGTGCGGAAGCAAAAATGGGACTCTGTGCTTGTTAACCAGTATCTTTGTGAGCTTAAAGAAGCAAAGAAGCAGGGAAGGAAAGAAAGGAGGCACAAAGAAGCACAGGCTGTGCTTGCTGCTGCAACTGCTGCTGCTGCAGCTTCCTCTAGGATTTCATCGTTTAGGAAAGATGCCATTGATGAATCTGCTCATCAGGAGAATCTGTTGAAGGTAAACACTTCTAGTGGACGGGCTGGGCTTTCCTCTCAGCCAATGCCACGAGCAAAGGAGACACTCTCAAGGGTTGCTGCGCCAAGGGTTTCATCAGAAAAGTTTTCTGATTTTGTCCAATCTAACTTAGATTTTTCTAAAGAGCATGGTAGATCGTGTGACATTTGCAGACGCTCTGAGACAATTTTGAATCCAATTTTAGTCTGTTCCAGTTGCAAGGTGGCTGTTCACTTGGATTGCTATCGTAGTGTTACAGATTCTCCAGGTCCATGGTATTGTGAACTATGTGAAGAATTAGTGTCATCTAAAGGCTCTAGAGCTCCAGCTGTCAATTTCTGGGAGAAGCCTGCCTTTGCTGTAGAATGTGGTCTTTGTGGTGGCAATGCTGGTGCTTTTAGAAAGACAACTGATGATCAATGGGTTCATGCTTTCTGCGCTGAGTGGGTGCTTGAATCAACATTCAGAAAGGGACAAGTAAATCCTGTTGAAGGAATGGAGACAGTTTCAAAGGGGAGTGATGTTTGTTATATCTGTCATCGCAAAAATGGTGTCTGCATAAAGTGTAACTATGGTCACTGTCAGAGCACTTTTCATGCTTCTTGTGCTCGAAGTGCTGGTTTATACATGAATGTGAAGACTGGTGCTGGCAAGCTGCAGCACAAAGCATATTGTGAAAAACATAGCTTGGAACAGAGGGCAAAGGCCGAGACACAAAAAGCTGGAATTGAAGAGTTAAAGAACATTAAACAAATTAGGGTTGAACTGGAGAGGTTACGCCTTCTTTGTGAGAGAATTATCAAACGAGAAAAATTGAAGCGGGAATTGATACTTTGTTCACATGACATACTTGCTTCAAAAAGAGACTCTGTTGCTTTGTCTGTGCTTGTCCATAGCCCCTTCTTCCCTCCTGATGTTAGTTCAGAATCAGCTACAACATCTCTTAAAGGGCATATGGATGGCTACAAATCAAGTAGTGAAGCTATCCAGAGATCAGATGACATAACAGTGGACAGCACAATTTCTGGTAAGCACTGTATTAAGCTTCCTGTCTCCATGGACAGTGACCAAAAGACAGATGACAGCTCCACATCCCAGCACCTTTGTACAAGAAAGCCTTCAGAGGGGGCTTCATTTTGTGGGAAGCAAATCCCTCTTAGACCTTCATCTGTTGCATCTCGGAATGTTTCGGGTGAGGTTGAGAAAAGATCAAAATCCAGAAAGCACACTGAAACATTTGAAAAGGAGCTGGTAATGACATCAGATCAAGCATCTGTGAAGAATCAACGATTACCTAAAGGATTTGTTTATGTTCCTATTGGTTGCCTTTCGAAGGAGAAACAGATCAACCAGGATGCATGTCCTCGTGAATCAGTGGAACGTGATGGGTAG 4608 41.95 MTGGRCHRQKKMMGRGAERGCGTEEKPCPISRAPAKISAKQPGNPGKEVSLGVDLYAQARKALSDRCPFETEEALANTVSTLPSGLACLLSKHSDSRKRHKKSHSDTKSSSRQSRGANIWLETEGYFRELAFPDIETLVEVSSSVSLATEKNFLIPYIGNPIEANGVSSELQNGENANGNGIVVKEEDKKEDNQLMEIDSVETEVLPPEEKACSQSPLSSGLEWLLGLKNKVLLTSERPNKKRKLLGSDAGLEKLIIARPCEGNSSLTMPWMPEVYVEDTRKMEPIMNIDGIKETRKKLVCNVCKVKYGACVRCSNGACRTSFHPICAREARHRMEIWGKFGCDNLELRAFCLKHSEVQDVSSTQQLGDFSAADGSNTSSHPPVTSVNKPQKLKIGLRNGDKIAVHMETPDNNSNKLSDGEFQETGLPNTRSKAELMSGCADAQQLIGMRMLETINSEGVNPSDSINLALILKKLIERGKVSVKDVALDIGVSPDSLAATLADDHLVPDLQCKILKWLKDHAYMGTLQKNLKRPNLAKICLSMRSNPPYAYLISVLSTAVLTLFGISFFFHCSIGAQTSYEFYPLNFGFLAWVSLSLKCDIPFLKKEKNNNANDDDDDGFGVATCFIVLHHNISHIIKMKFGVNEHRKNTLVMNNLKFELFFLSDRTPFINCDNKISFHLIVSFLWTGPCVEFICLKESSVERMEYFAKSECSKAQDCNWEGFNLPTYLINITNPYSNEEGNICKNHCSPHLPYTGKHLPPFSNGEPFSLSLTVSPMTLIPLFFFLNVLMGAEGSCFLMLPSHEFCILDPVCISDSSGKKSSPLVCSSEPSNCSLSDSGRIEEDCGEDNTLVNLNKENPVCSVVDPVPPDLINTKTVSGSYIHPLIYQKLRQTQSGLLLKNTICSRGPEISPMETSSYVRVPCNHQSQHSTCTEMICKSEGENLEQLVKARNTGVLELSPEDEVVGELIYFQNRLLGNAVARKNLSDDLICKVVKSLPQEIEVVRKQKWDSVLVNQYLCELKEAKKQGRKERRHKEAQAVLAAATAAAAASSRISSFRKDAIDESAHQENLLKVNTSSGRAGLSSQPMPRAKETLSRVAAPRVSSEKFSDFVQSNLDFSKEHGRSCDICRRSETILNPILVCSSCKVAVHLDCYRSVTDSPGPWYCELCEELVSSKGSRAPAVNFWEKPAFAVECGLCGGNAGAFRKTTDDQWVHAFCAEWVLESTFRKGQVNPVEGMETVSKGSDVCYICHRKNGVCIKCNYGHCQSTFHASCARSAGLYMNVKTGAGKLQHKAYCEKHSLEQRAKAETQKAGIEELKNIKQIRVELERLRLLCERIIKREKLKRELILCSHDILASKRDSVALSVLVHSPFFPPDVSSESATTSLKGHMDGYKSSSEAIQRSDDITVDSTISGKHCIKLPVSMDSDQKTDDSSTSQHLCTRKPSEGASFCGKQIPLRPSSVASRNVSGEVEKRSKSRKHTETFEKELVMTSDQASVKNQRLPKGFVYVPIGCLSKEKQINQDACPRESVERDG* 1536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3668327 3697476 + Vvi18g332 Vvi18g332 780035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g332 1535 MobiDBLite consensus disorder prediction 369 392 - -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 369 387 - -
Vvi18g332 1535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1105 1179 IPR013083 -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 406 427 - -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 1 47 - -
Vvi18g332 1535 SUPERFAMILY FYVE/PHD zinc finger 1119 1172 IPR011011 -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 1424 1484 - -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 93 115 - -
Vvi18g332 1535 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 271 411 - -
Vvi18g332 1535 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 925 1525 - -
Vvi18g332 1535 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 193 266 - -
Vvi18g332 1535 Coils Coil 1321 1341 - -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 1428 1444 - -
Vvi18g332 1535 ProSitePatterns Zinc finger PHD-type signature. 1126 1169 IPR019786 -
Vvi18g332 1535 ProSiteProfiles Zinc finger PHD-type profile. 1123 1172 IPR019787 -
Vvi18g332 1535 Pfam PHD-like zinc-binding domain 269 356 - -
Vvi18g332 1535 ProSiteProfiles Extended PHD (ePHD) domain profile. 229 356 IPR034732 -
Vvi18g332 1535 Pfam PHD-zinc-finger like domain 1194 1300 - -
Vvi18g332 1535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 358 IPR013083 -
Vvi18g332 1535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1190 1302 IPR013083 -
Vvi18g332 1535 ProSiteProfiles Extended PHD (ePHD) domain profile. 1192 1301 IPR034732 -
Vvi18g332 1535 CDD ePHD 1195 1300 - -
Vvi18g332 1535 Pfam PHD-finger 1137 1170 - -
Vvi18g332 1535 PANTHER PHD FINGER PROTEINS 271 411 - -
Vvi18g332 1535 PANTHER PHD FINGER PROTEINS 925 1525 - -
Vvi18g332 1535 PANTHER PHD FINGER PROTEINS 193 266 - -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 408 427 - -
Vvi18g332 1535 MobiDBLite consensus disorder prediction 1470 1484 - -
Vvi18g332 1535 SMART PHD_3 1247 1301 IPR001965 -
Vvi18g332 1535 SMART PHD_3 1125 1170 IPR001965 -
Vvi18g332 1535 SMART PHD_3 300 356 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g332 - - - vvi:100245365 1371.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g332 . . . . . . . . Cmo04g02429 . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1260 Cone20ag0468 . . . . Blo17g00200 . . Bda13g01503 . Bpe14g00362 . Bma02g00243 . . . . . Car04g02243 Car15g00662 Cpe01g02018 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003906 1 3 1 1 1 2 2 2 1 1 1 1 2 1 1 2 2 2 2 2 1 1 1 2 2 2 1 1 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14319 PF13832 zf-HC5HC2H_2 8.70E-24 CL0390 Vvi TR