Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g333 ATGTGCCGTTGGAGGGACGGAAAATATCATCCCGTCAAGGTCATTGAACGCCGTAAAATGCATATCGGCGGTGTCAATGATTACGAGTATTATGTTCATTACACGGAATTCAATAGGAGGCTTGATGAATGGGTTAAGCTTGAACAACTTGATCTTGAATCCGTAGAGGCTGTTGTTGATGAAAAGGTGGAGGACAAGGTAACTAGCTTGAAAATGACACGCCATCAGAAGCGTAAGATTGATGAGACACATGTAGAGGGCCATGAAGAGCTTGATGCTGCCAGCTTGCGTGAGCATGAAGAATTTACAAAAGTGAAAAATATAGCAACTATAGAACTTGGGAGATATGAAATCGAAACATGGTATTTCTCTCCCTTTCCACCAGAATACAATGACTCTCTGAAGCTGTACTTCTGTGAGTTTTGCCTCAATTTCATGAAGCGGAAAGAACAGCTTCAGAGGCATATGAGGAAATGTGATCTCAAGCATCCCCCTGGAGATGAGATATACCGAAGTGGCACATTATCAATGTTTGAGGTTGATGGCAAAAAGAACAAGGTTTATGGGCAGAACCTCTGTTATTTGGCAAAATTGTTTCTTGATCACAAGACCCTCTATTATGACGTTGACCTGTTTCTATTTTATGTGCTGTGTGAATGTGATGATCGTGGATGCCACATGGTCGGATATTTTTCTAAGGAAAAGCATTCAGAGGAATCCTATAATTTAGCCTGCATTCTCACCCTTCCTCCATATCAAAGGAAAGGTTACGGGAAATTCCTAATTGCATTCTCATATGAACTTTCCAAGAAAGAAGGCAAAGTCGGTACACCTGAAAGACCCCTTTCTGACTTAGGGCTGTTGAGCTATCGGGGATACTGGACCCGTGTCCTTCTAGACATCTTGAAAAAACACAAGGGCAATATTTCTATCAAGGAGCTCAGTGACATGACAGCCATTAAGGCAGAGGATATATTGACTACTCTTCAAAGCCTAGAATTGATTCAGTACCGGAAAGGCCAGCATGTCATCTGTGCTGATCCCAAGGTCTTAGATCGGCATCTGAAAGCTGCTGGCCGGGGTGGTTTAGAGGTTGATGTTAGCAAATTGATCTGGACTCCTTACAAAGAACAAGGTTGA 1140 42.46 MCRWRDGKYHPVKVIERRKMHIGGVNDYEYYVHYTEFNRRLDEWVKLEQLDLESVEAVVDEKVEDKVTSLKMTRHQKRKIDETHVEGHEELDAASLREHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDSLKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAKLFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEESYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQG* 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3700490 3718099 + Vvi18g333 Vvi18g333 780036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g333 379 PANTHER HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2 1 378 - -
Vvi18g333 379 Pfam RNA binding activity-knot of a chromodomain 1 52 IPR025995 -
Vvi18g333 379 Gene3D - 104 160 - -
Vvi18g333 379 Gene3D - 282 362 IPR036388 -
Vvi18g333 379 Pfam MYST family zinc finger domain 105 159 IPR040706 -
Vvi18g333 379 ProSiteProfiles MYST-type histone acetyltransferase (HAT) domain profile. 103 374 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vvi18g333 379 PANTHER HISTONE ACETYLTRANSFERASE 1 378 - -
Vvi18g333 379 SMART chromo_7 8 67 IPR000953 -
Vvi18g333 379 CDD NAT_SF 215 273 - -
Vvi18g333 379 Gene3D - 162 374 - -
Vvi18g333 379 SUPERFAMILY Chromo domain-like 1 104 IPR016197 -
Vvi18g333 379 Gene3D - 1 103 - -
Vvi18g333 379 Pfam MOZ/SAS family 164 341 IPR002717 GO:0004402|GO:0006355|GO:0016573
Vvi18g333 379 CDD CBD_MOF_like 1 66 - -
Vvi18g333 379 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 104 375 IPR016181 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g333 K11308 - vvi:100247177 778.474