Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g334 ATGGAGAACGCCGACCCGTTCGCCTCATCGACCGCGCCACTGACCTGGCATGACTTTCTGGAGCGCATGCGACAACCCTCCGCCGCTGATTTCGTCAAAGCAATCAAAAGTTTTATCGTGTCATTCTCAAACAATGCACCAGATCCTGAACGGGACAGTGCTGCTGTGCAAGAGTTTCTTGCCAACATGGAAATGGCTTTCAGGGCTCATCCGCTTTGGGCTGGTTGCTCTGAGGAGGAGCTGGAGAGTGCTGGTGAAGGGTTGGAGAAGTATGTCATGACAAAGTTATATACTCGCGTATTTGCTTCGGTCCCAGATGATTCAAAGTTAGATGAACAACTTTTTGAGAAGATCGGTTTAGTTCAACAGTTCATTCGTCCAGAACAATTGGATATTAAAACAACCTTTCAAAATGAAACATCATGGCTGCTTGCACAGAAAGAGCTACAAAAGATCAATATGTACAAGGCACCAAGAGATAAACTTGTCTGTATTCTCAATTGTTGCAAGGTCATCAATAATTTGTTGCTTAATGCTTCTATTGCTTCGAATGAGGATCCTCCTGGAGCTGATGAGTTTCTTCCTGTCCTAATTTATGTTACCTTAAAGGCAAACCCTCCACAACTGCACTCAAATTTGTTGTATATACTACGGTACAGGCGTCAATCCAGAATGGTTGCAGAAGCAGCTTACTTTTTCACAAACATGCTCTCTGCAGAGTCATTCATCTCAAACATCAATGCAGAATCCCTTTCAATGGATGAAAGAGAGTTTGAAATGAACATGGAATCTGCTCGAGCACTTCTATCTGGCCTCTCGTCTGATTTGGATGGTGTCAACATCTGGGGCAAAGTTGGAACCTCATGCAAAAGATCAGTTAATAACAAAAGTTCCATCCATTTCTGA 906 43.38 MENADPFASSTAPLTWHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAAVQEFLANMEMAFRAHPLWAGCSEEELESAGEGLEKYVMTKLYTRVFASVPDDSKLDEQLFEKIGLVQQFIRPEQLDIKTTFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEDPPGADEFLPVLIYVTLKANPPQLHSNLLYILRYRRQSRMVAEAAYFFTNMLSAESFISNINAESLSMDEREFEMNMESARALLSGLSSDLDGVNIWGKVGTSCKRSVNNKSSIHF* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3725279 3732386 - Vvi18g334 Vvi18g334 780037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g334 301 Gene3D VPS9 domain 105 271 IPR037191 -
Vvi18g334 301 Gene3D - 23 103 - -
Vvi18g334 301 ProSiteProfiles VPS9 domain profile. 108 252 IPR003123 -
Vvi18g334 301 SMART vps9_2 141 261 IPR003123 -
Vvi18g334 301 SUPERFAMILY VPS9 domain 15 263 IPR037191 -
Vvi18g334 301 PANTHER BNAC09G47180D PROTEIN 16 274 - -
Vvi18g334 301 PANTHER RAB GDP/GTP EXCHANGE FACTOR 16 274 IPR045046 GO:0005085|GO:0016192
Vvi18g334 301 Pfam Domain of unknown function (DUF5601) 33 97 IPR041545 -
Vvi18g334 301 Pfam Vacuolar sorting protein 9 (VPS9) domain 144 246 IPR003123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g334 K20131 RABGEF1; Rab5 GDP/GTP exchange factor - vvi:100252293 533.872
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g334 . . . . . . . . Cmo04g02424 Cmo15g00739 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1256 Cone20ag0471 . . . . Blo17g00201 . . Bda13g01504 . Bpe14g00360 . Bma02g00245 . . . . . Car04g02239 Car15g00666 Cpe01g02014 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006627 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38