Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g336 ATGATTACCCTGAAATGTGCTGCATGTGGGTTTGTTTCAGATGTCGATATGAGGGATAAGCTCACAACATTTATCCTCAAGAATCCTCCTGAGCAAAAGAAAACATCAAAAGACAAGAAGGCAATGAGAAGGGCTGAGAAGGAGCGGCTCAAGGAAGGGGAGGCTGCTGATGAGGAGCAGAAGAAGCTGAAAAAAGAGGCTAATGAAACAGAACCTGCTGATGAAAGTGATGATGATGTCCAATGGAAAACGGACCCATCTGTGGAGGCAGCTCAGCAACGAATCAAGGAACAACTGAGTGCTGGAGCCCAAAATGGGACTAAATCAGGTAATAATCAAGAAAGGCTTGTTGATGAAATCAAAGAGTATCTGAAGAAGGGTCCTTCTGCAGTCAAACTCAAGAACTTTTTGGGATCCCTTTCAGGGACTTCCCAAGAAATCATTGATGCCCTGTTTGAAGCTCTATTTATGGGCATTGGGAAGGGGCTTGCTAAAGAGGTGGCCAAAAAGAAAACCTACCTGGCAGCAGTCACCCAGGAAGATCGTTCGCAGTCCATTCTGCTGCGTGCTATTGAGTCCTTTTGTGGGAAATCAAATCCTGAGGCAGTAAAAGAGGTGGGCTTGGTTCTGAAAGCGCTGTATGACAATGATTTGCTGGAGGAAGAGTTCATACTAGAGTGGTATAAGCAGGGCTTGGCTGGTGGGAATAAGAACTCTAAGATCTGGAAGAATGTCAAGCCTTTCATTGAATGGCTCCAGAGTGCCGAGTCTGAATCAGAAGAGGAGTGA 789 45.5 MITLKCAACGFVSDVDMRDKLTTFILKNPPEQKKTSKDKKAMRRAEKERLKEGEAADEEQKKLKKEANETEPADESDDDVQWKTDPSVEAAQQRIKEQLSAGAQNGTKSGNNQERLVDEIKEYLKKGPSAVKLKNFLGSLSGTSQEIIDALFEALFMGIGKGLAKEVAKKKTYLAAVTQEDRSQSILLRAIESFCGKSNPEAVKEVGLVLKALYDNDLLEEEFILEWYKQGLAGGNKNSKIWKNVKPFIEWLQSAESESEEE* 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3741184 3745653 + Vvi18g336 Vvi18g336 780039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g336 262 Gene3D - 89 253 - -
Vvi18g336 262 Gene3D - 1 33 - -
Vvi18g336 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 109 262 - -
Vvi18g336 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 1 71 - -
Vvi18g336 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 75 101 - -
Vvi18g336 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 109 262 IPR045196 GO:0003743|GO:0006413
Vvi18g336 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 71 IPR045196 GO:0003743|GO:0006413
Vvi18g336 262 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 75 101 IPR045196 GO:0003743|GO:0006413
Vvi18g336 262 CDD W2_eIF5 111 255 - -
Vvi18g336 262 SUPERFAMILY ARM repeat 110 256 IPR016024 -
Vvi18g336 262 SMART 542_3 171 258 IPR003307 GO:0005515
Vvi18g336 262 Coils Coil 42 62 - -
Vvi18g336 262 MobiDBLite consensus disorder prediction 31 84 - -
Vvi18g336 262 Pfam eIF4-gamma/eIF5/eIF2-epsilon 184 262 IPR003307 GO:0005515
Vvi18g336 262 MobiDBLite consensus disorder prediction 24 91 - -
Vvi18g336 262 ProSiteProfiles W2 domain profile. 102 262 IPR003307 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g336 K03262 - vvi:100262554 448.358